KEGG   Panicum virgatum (switchgrass): 120682525
Entry
120682525         CDS       T07260                                 
Name
(RefSeq) UBP1-associated protein 2B-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120682525
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120682525
   03041 Spliceosome [BR:pvir03041]
    120682525
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     120682525
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120682525
Spliceosome [BR:pvir03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    120682525
SSDB
Motif
Pfam: RRM_1 RRM_7 SNAPC2
Other DBs
NCBI-GeneID: 120682525
NCBI-ProteinID: XP_039820414
LinkDB
Position
7N:complement(47031326..47034788)
AA seq 527 aa
MAPKKRKADPAEPAAAAEPAAGNHRQEPASSENKPRGTIYFPITDDPEPTASAEEDEDEV
AVDDEDEAEDIGKLLEPLSREQLVSLLRTAAEASPVTMAAVRRAAEADPASRKLFVHGLG
WGAGADDLRSAFSRFGELEDCRVISDKQSGRSKGYGFVLFRSRHAALRALRRPQLQIGGR
LAFCHLAASGPAPPASQSQNPTSNANTNSNSNSGTTNNASGSSSSQPDNMPRKIFVGNVH
ADVDVDRLYEYFSQFGEIEEGPLGFDKNTGKPKGFALFVYKSVEGARRALEEPMRNFDGK
MLNVQKAIDGRTKGSSGTNANANSNAATASAAAAAQMTAPASAAISPYDASAYGTTAVTD
LGFAQQAAMLGLGAQQQAFAQPNAMLAMIAAMQNPAALGMTPAMLAAMNPAFAAAALSAG
GQQAHTAGLTGFGAQGFGTQAFGAGGATFPNAAGVQAAAAAAYQGGGAPPGFQGPPGFQV
GQATTQTSTAAAAAAAAASAAGYQAGAAGQGQVPGAQIGGTGFQGGY
NT seq 1584 nt   +upstreamnt  +downstreamnt
atggcgccgaagaagcgaaaagccgatccggccgagcccgccgccgccgcggagccagcc
gccgggaaccaccgccaggaaccggcgtcctccgagaacaagccccgcggtaccatctac
ttccccatcactgacgacccggagcctaccgcctccgccgaggaggacgaggacgaggtc
gccgtcgacgatgaggacgaggcggaggacatcgggaagctcctcgagccgctgtcgcgg
gagcagctcgtgtcgctactccgcacggccgcggaggcgagccccgtcacgatggcggcc
gtgcgacgggccgcggaggccgaccccgcgagcaggaagctcttcgtccacggcctcggg
tggggcgccggcgccgacgacctccgctccgcgttctcacgcttcggcgagctcgaggac
tgccgcgtcatctccgacaagcagtcgggcagatccaagggctacgggttcgtcctcttc
cgctcccgccacgctgcgctccgcgccctacgccgtccccagctccaaatcggaggtcgt
cttgctttctgccacctcgccgcctcaggtcccgcacccccagcctctcagtctcagaac
cctacctccaatgccaacaccaattccaactccaactccggtaccaccaacaatgcttct
ggctcctcatcctcgcaacccgataacatgccacgcaagatatttgttggtaatgtgcat
gctgatgtggacgtcgaccgcctatatgagtacttctcgcaatttggtgagattgaggag
gggcccttgggcttcgacaagaacactggcaaacccaagggatttgcattgtttgtttac
aagtctgtggagggtgcccgccgtgcattggaggagccaatgaggaattttgatggcaag
atgctcaacgtgcagaaagctatagatgggaggaccaagggctcatctgggacaaatgca
aatgctaattctaatgccgccactgcctctgcggccgcagccgcacaaatgactgctcct
gccagtgctgccattagcccatatgatgcatcagcgtatggtactactgctgttactgac
ttgggttttgcacagcaagctgctatgctgggattaggtgcacaacaacaggcatttgcg
cagcccaatgcaatgcttgccatgatagcggcaatgcagaacccagccgcgctggggatg
acgccagccatgcttgcagctatgaacccggcctttgctgctgctgcactgagtgctggg
gggcagcaggcacacacagctggtcttacaggttttggagctcagggatttgggacacag
gcatttggagctggaggtgccactttcccaaatgcagcgggtgttcaagctgctgcagct
gctgcatatcaaggaggtggagctccccctggttttcaagggccacctgggtttcaggtc
ggccaagcaactacccagactagtactgcagcggctgcggcggcagctgctgccagtgct
gctggttatcaggctggggctgctgggcagggccaagtgcctggtgctcagatcgggggc
actggttttcagggtggatactga

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