Panicum virgatum (switchgrass): 120682828
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Entry
120682828 CDS
T07260
Name
(RefSeq) chalcone synthase C2-like
KO
K00660
chalcone synthase [EC:
2.3.1.74
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00941
Flavonoid biosynthesis
pvir00960
Tropane, piperidine and pyridine alkaloid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
pvir04712
Circadian rhythm - plant
Module
pvir_M00137
Flavanone biosynthesis, phenylalanine => naringenin
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09110 Biosynthesis of other secondary metabolites
00941 Flavonoid biosynthesis
120682828
00960 Tropane, piperidine and pyridine alkaloid biosynthesis
120682828
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
120682828
09180 Brite Hierarchies
09181 Protein families: metabolism
01008 Polyketide biosynthesis proteins [BR:
pvir01008
]
120682828
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.74 chalcone synthase
120682828
Polyketide biosynthesis proteins [BR:
pvir01008
]
Polyketide synthase (PKS)
Type III PKS
Plant type
120682828
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Gene cluster
GFIT
Motif
Pfam:
Chal_sti_synt_N
Chal_sti_synt_C
FAE1_CUT1_RppA
ACP_syn_III
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
120682828
NCBI-ProteinID:
XP_039820790
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Position
7N:17480209..17482415
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AA seq
398 aa
AA seq
DB search
MAAKVTVEEVRKAQRAEGPATVLAIGTVTPPNCVYQADYPDYYFRVTKSEHLTDLKEKFN
RICRKSMVQKRYMHLTEDILQENPNMASYSAPSLNARQDILVDEVPKLGAAAAEKALKEW
GQPRSQITHIIFCTTSGVDMPGADSRLIKLLGLSPSVKRVMLYHQGCFAGGMVLRIAKDL
AENNRGARVLIVCSEITVVTFRGPSESHLDSLVGQALFGDGAAAVVVGADPNELVERPLF
QLVSAGETILPDSDGAIEGHLREVGLTFHLQERVPELISTNIERLLEEAFKPLGISDWNS
IFWVAHPGGPAILNMVEAKAGIDKARLRATRHVLAEYGNMSSACVLFILDEMRKFSAEDG
RATTGEGMDWGVLFGFGPGLTVETLVLHSVPIPTGHSA
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaaggtgacggtggaggaggtgaggaaggcgcagcgcgcggagggcccggcg
acggtgctggccatcggaacagtgacgccgccgaactgcgtgtaccaggccgactacccg
gactactacttccgggtcaccaagagcgagcacctgaccgacctcaaggaaaaattcaac
aggatatgccgcaagtcgatggtccagaagcgctacatgcacttgacggaggacatcctg
caggagaaccctaacatggcctcgtactcggcgccatccctaaacgcacggcaggatatc
ctggtggacgaggtgccaaaactgggtgccgcggcggcagagaaggcgctcaaggagtgg
ggccagccgcggtctcaaatcacgcacatcatcttctgcaccacctcgggcgtggacatg
cccggcgccgactcccggctcatcaagctcctcggcctgagcccctccgtgaagcgagtc
atgctgtaccaccagggctgcttcgccggagggatggtgctccgaatcgccaaggacctc
gcggagaacaaccgcggtgccagggtgctcatcgtgtgctctgagatcaccgtggtaacg
ttccgtggcccctccgagtctcacctcgactcgctcgtcggccaggctctgttcggcgac
ggcgcggcggcggtggtcgtgggcgcagacccgaatgagcttgtagagcggccattgttt
cagctggtatcggcgggggagaccatcctgccggactcggacggcgccatcgagggccac
ctccgtgaggttgggctcaccttccacctccaggaaagggttccggagctcatctccacc
aacatcgagcgcctgctggaggaggctttcaagccgctaggcatatcggactggaactcc
atcttctgggtggcgcaccctggcggcccggccatactgaacatggtcgaggccaaggct
ggcatcgacaaggccaggctccgtgccacccgccacgtcctggctgagtatggcaacatg
tcgagcgcctgcgtgctcttcatcctcgacgagatgaggaagttctccgccgaggacgga
cgagctacgaccggcgagggtatggactggggtgtcctctttggcttcggccccggcctc
acggtcgagaccctcgttctccacagcgtccccatccctactgggcattctgcgtaa
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