Panicum virgatum (switchgrass): 120682934
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Entry
120682934 CDS
T07260
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120682934
09123 Folding, sorting and degradation
03018 RNA degradation
120682934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120682934
03041 Spliceosome [BR:
pvir03041
]
120682934
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120682934
mRNA degradation factors
5'-3' decay
Lsm complex
120682934
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120682934
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
120682934
NCBI-ProteinID:
XP_039820879
LinkDB
All DBs
Position
7N:complement(25416989..25420613)
Genome browser
AA seq
97 aa
AA seq
DB search
MSTGGADKPSGGGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLTDGA
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccggcggcgcggacaagcccagcggcggcggcggcggcggcgcggtgaagacg
ccgtccgacttcctcaagtccatccgtggccgccccgtcgtcgtcaagctcaactccggc
gtagactacagaggtattctcgcttgccttgatggttatatgaacatcgcgatggagcag
accgaggagtatgtaaatggtcagctgaagaacaagtatggcgacgccttcataagaggc
aacaatgttttatacatcagcacgtcgaagcggacactcaccgatggcgcgtag
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