Panicum virgatum (switchgrass): 120682950
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Entry
120682950 CDS
T07260
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein U-like protein 1
KO
K15047
heterogeneous nuclear ribonucleoprotein U-like protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120682950
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120682950
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
hnRNP proteins
120682950
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
120682950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_33
KTI12
Zeta_toxin
AAA_17
NB-ARC
6PF2K
Motif
Other DBs
NCBI-GeneID:
120682950
NCBI-ProteinID:
XP_039820892
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All DBs
Position
7N:complement(46985775..46989156)
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AA seq
667 aa
AA seq
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MASPDDEAAQPPPKRSRRDPEADEAAAQPPRVELNPADCDLDFDVGGGGLQGSALHEGGF
AYCWSGARATVGARGGGRYCFGCRIVAEQPVEMDLTAPEERHLCRIGVSRGDDPVGALGE
SDHSFGFGGTGKFSHQRRFANYGVRFGVGDTVVCAVDLDSKPMASIGFARNGQWLGIAKH
FDAGEKGLGLVDAAVRPMQWESALFPHVLLKNVVGEMQFSREDGLEPVDGYEPWASAFAD
GNAVFGPLFEQSECEVMMMVGLPASGKSTWSEKWVKEHPEKRFILLGTNLALEQMKVPGL
LRKNNYGERFDRLMECATWIFNKLLTRAANTRRNFIIDQTNVYKNARIRKLRPFANYCKT
AVVVFPPPSELKSRAAKRFDEMGKEVPAEAVNEMTANFVLPLSRDMPDSKEPFNKVIFTE
LSRDEAQRNLLEMQRVLPRTRTPSNDNSSNQNASSTYAVTAAPVDPFPRARSSMANIYPP
MANSYGSYSVTVPGSAATFSTGVHTAGITMQQKAPSSVQRFQSPTGNQHEFHSGYPSAPD
QYRMPSSYPSNPNQYQLHGSYQSTPLTGYGQSKYGSHRNSSPYNPNPYNPEMHQCIQAPM
TNRNLYQAPGSAEAYRVPRYAAANLIGRPHQVPPPTLPAYSSQPVAQWVPNQYSSSSWSS
DSCRPYG
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgccggacgacgaggccgcgcagccaccgccgaagcgttcccggcgcgacccc
gaagcggacgaggccgccgcccagccgccgcgcgtggagctcaacccggcggactgcgat
ctcgacttcgatgtcggcgggggcggcctccaggggagcgcgctgcacgagggcgggttc
gcctactgctggtcgggcgcgcgcgcgacggtgggcgccaggggcggcgggaggtactgc
ttcgggtgcagaatcgtcgccgagcagcccgtggagatggacctcacggcccccgaggag
cgccacctctgccgcattggcgtctccaggggcgacgatcccgtgggggcgctcggggag
tccgaccacagcttcgggttcgggggcacggggaagttttcccaccagcggaggttcgcc
aactacggcgtcaggttcggggtcggggacacggtcgtctgcgccgtggacctcgattcg
aagcccatggcgtcgatcgggttcgcgaggaacggccagtggcttggtatcgcgaagcat
ttcgatgccggtgagaaggggcttggcttggttgacgcagctgtgaggccgatgcaatgg
gaatcagcgctctttccccatgtcctgctcaagaatgttgtcggggagatgcagttcagc
agggaggatgggctggagccagttgatggttatgagccctgggcctcggcttttgctgat
gggaatgcagtatttggacctctttttgaacagagtgaatgtgaggtcatgatgatggtt
ggtctcccggcttcaggcaagtcgacatggtcagagaagtgggtcaaggagcatccggag
aaacgttttatccttcttgggactaaccttgcattggagcaaatgaaggtgccaggattg
ttgcgtaagaataactatggtgagcgttttgatcggttgatggagtgtgctacatggatt
ttcaacaaattgctgaccagggctgcaaacacccgtcgcaactttatcattgatcaaaca
aatgtttacaagaatgctcgtattcgcaagctgaggccttttgccaactattgtaagact
gctgtggtcgtattcccacctccaagtgaactgaaatccagggcggcaaagcgattcgat
gagatgggaaaggaagtgccagctgaagcagttaacgaaatgacagccaattttgtcttg
ccgctctcaagggatatgcctgattcgaaggagccttttaacaaggtaatttttacagag
ctttctagggatgaggcccagagaaatctacttgagatgcaacgagtgctgccaagaacc
aggaccccaagcaatgacaattccagtaaccaaaatgctagctcaacgtatgcagtgact
gctgctccagttgatccttttcctagggcaaggtcatccatggcaaatatttacccacca
atggccaattcttatggaagttatagtgttacggtacctggaagtgctgctactttcagc
acaggtgtgcatactgcaggcatcacaatgcagcaaaaggcaccatctagtgttcagagg
tttcagagtccaacaggaaaccaacatgaatttcattcaggctacccaagtgctccagac
cagtatcggatgccgtcaagctatccgagtaacccaaaccaatatcagttacatggaagc
taccaaagtaccccacttactggttatggacagagcaaatatggatcccataggaactcg
agcccatacaatcctaatccttataaccctgagatgcaccaatgtattcaggctcccatg
actaataggaacctctaccaggcacctgggtcagccgaagcctatagggtccctcgctat
gcagctgccaatctgattgggaggccacatcaggtgccaccaccaactcttccagcatat
agttcacaacctgttgctcagtgggtgccaaatcaatatagttcttcctcatggagttct
gacagttgcaggccctatggataa
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