KEGG   Panicum virgatum (switchgrass): 120682950
Entry
120682950         CDS       T07260                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein U-like protein 1
  KO
K15047  heterogeneous nuclear ribonucleoprotein U-like protein 1
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120682950
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120682950
Spliceosome [BR:pvir03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   hnRNP proteins
    120682950
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Other HR factors
     120682950
SSDB
Motif
Pfam: AAA_33 KTI12 Zeta_toxin AAA_17 NB-ARC 6PF2K
Other DBs
NCBI-GeneID: 120682950
NCBI-ProteinID: XP_039820892
LinkDB
Position
7N:complement(46985775..46989156)
AA seq 667 aa
MASPDDEAAQPPPKRSRRDPEADEAAAQPPRVELNPADCDLDFDVGGGGLQGSALHEGGF
AYCWSGARATVGARGGGRYCFGCRIVAEQPVEMDLTAPEERHLCRIGVSRGDDPVGALGE
SDHSFGFGGTGKFSHQRRFANYGVRFGVGDTVVCAVDLDSKPMASIGFARNGQWLGIAKH
FDAGEKGLGLVDAAVRPMQWESALFPHVLLKNVVGEMQFSREDGLEPVDGYEPWASAFAD
GNAVFGPLFEQSECEVMMMVGLPASGKSTWSEKWVKEHPEKRFILLGTNLALEQMKVPGL
LRKNNYGERFDRLMECATWIFNKLLTRAANTRRNFIIDQTNVYKNARIRKLRPFANYCKT
AVVVFPPPSELKSRAAKRFDEMGKEVPAEAVNEMTANFVLPLSRDMPDSKEPFNKVIFTE
LSRDEAQRNLLEMQRVLPRTRTPSNDNSSNQNASSTYAVTAAPVDPFPRARSSMANIYPP
MANSYGSYSVTVPGSAATFSTGVHTAGITMQQKAPSSVQRFQSPTGNQHEFHSGYPSAPD
QYRMPSSYPSNPNQYQLHGSYQSTPLTGYGQSKYGSHRNSSPYNPNPYNPEMHQCIQAPM
TNRNLYQAPGSAEAYRVPRYAAANLIGRPHQVPPPTLPAYSSQPVAQWVPNQYSSSSWSS
DSCRPYG
NT seq 2004 nt   +upstreamnt  +downstreamnt
atggcgtcgccggacgacgaggccgcgcagccaccgccgaagcgttcccggcgcgacccc
gaagcggacgaggccgccgcccagccgccgcgcgtggagctcaacccggcggactgcgat
ctcgacttcgatgtcggcgggggcggcctccaggggagcgcgctgcacgagggcgggttc
gcctactgctggtcgggcgcgcgcgcgacggtgggcgccaggggcggcgggaggtactgc
ttcgggtgcagaatcgtcgccgagcagcccgtggagatggacctcacggcccccgaggag
cgccacctctgccgcattggcgtctccaggggcgacgatcccgtgggggcgctcggggag
tccgaccacagcttcgggttcgggggcacggggaagttttcccaccagcggaggttcgcc
aactacggcgtcaggttcggggtcggggacacggtcgtctgcgccgtggacctcgattcg
aagcccatggcgtcgatcgggttcgcgaggaacggccagtggcttggtatcgcgaagcat
ttcgatgccggtgagaaggggcttggcttggttgacgcagctgtgaggccgatgcaatgg
gaatcagcgctctttccccatgtcctgctcaagaatgttgtcggggagatgcagttcagc
agggaggatgggctggagccagttgatggttatgagccctgggcctcggcttttgctgat
gggaatgcagtatttggacctctttttgaacagagtgaatgtgaggtcatgatgatggtt
ggtctcccggcttcaggcaagtcgacatggtcagagaagtgggtcaaggagcatccggag
aaacgttttatccttcttgggactaaccttgcattggagcaaatgaaggtgccaggattg
ttgcgtaagaataactatggtgagcgttttgatcggttgatggagtgtgctacatggatt
ttcaacaaattgctgaccagggctgcaaacacccgtcgcaactttatcattgatcaaaca
aatgtttacaagaatgctcgtattcgcaagctgaggccttttgccaactattgtaagact
gctgtggtcgtattcccacctccaagtgaactgaaatccagggcggcaaagcgattcgat
gagatgggaaaggaagtgccagctgaagcagttaacgaaatgacagccaattttgtcttg
ccgctctcaagggatatgcctgattcgaaggagccttttaacaaggtaatttttacagag
ctttctagggatgaggcccagagaaatctacttgagatgcaacgagtgctgccaagaacc
aggaccccaagcaatgacaattccagtaaccaaaatgctagctcaacgtatgcagtgact
gctgctccagttgatccttttcctagggcaaggtcatccatggcaaatatttacccacca
atggccaattcttatggaagttatagtgttacggtacctggaagtgctgctactttcagc
acaggtgtgcatactgcaggcatcacaatgcagcaaaaggcaccatctagtgttcagagg
tttcagagtccaacaggaaaccaacatgaatttcattcaggctacccaagtgctccagac
cagtatcggatgccgtcaagctatccgagtaacccaaaccaatatcagttacatggaagc
taccaaagtaccccacttactggttatggacagagcaaatatggatcccataggaactcg
agcccatacaatcctaatccttataaccctgagatgcaccaatgtattcaggctcccatg
actaataggaacctctaccaggcacctgggtcagccgaagcctatagggtccctcgctat
gcagctgccaatctgattgggaggccacatcaggtgccaccaccaactcttccagcatat
agttcacaacctgttgctcagtgggtgccaaatcaatatagttcttcctcatggagttct
gacagttgcaggccctatggataa

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