Panicum virgatum (switchgrass): 120682984
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Entry
120682984 CDS
T07260
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp31 homolog
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120682984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120682984
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
120682984
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Gene cluster
GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
120682984
NCBI-ProteinID:
XP_039820925
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Position
7N:40491357..40496857
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AA seq
485 aa
AA seq
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MASLADSFLADLDELSDNEGYPEEDNAEAAGMEDDGDDDMPDLESLNYDDLDSVSKLQKT
QRYNDIMQKVEDALQKSTDFSNQGSILEEDPEYQLIVDCNALSVDIENEIIIIHNFIRDK
YRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPL
SEENLKKTVEACDRALTLDAAKKKVLDFVESRMGYIAPNLSAIVGSAVASKLMGTAGGLG
ALAKMPACNVQLLGAKRKNLAGFSTATSQFRVGYLEQTEVFQSTPPALRTRACRLIAAKS
TLAARIDSIRGDPTGKAGRNLLEEIRKKIEKWQEPPPAKLPKPLPVPDSEPKKKRGGRRL
RKMKERYAQTDMMKLANRMQFGIPEESSLGDGLGEGYGMLGQAGSGKLRVSAGQNKLAAK
VAKKFKEKSYGSSGATSGLTSSLAFTPVQGIELSNPQAQGNPLGGGTQSTYFSETGTFSK
IRRTQ
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcgagccttgccgattcttttctagcggatcttgatgaactgtcagacaatgaaggc
tatcctgaagaagacaatgctgaggcagctggtatggaggatgacggtgatgatgatatg
cctgaccttgagtctcttaattacgatgatctggatagtgtctcaaagttgcagaagacg
caacgctataatgacataatgcaaaaagttgaagatgcacttcagaaaagcactgacttc
tccaatcaaggttccatcctggaggaggatccagagtaccagcttattgtggactgcaat
gctttatcagtagatattgagaatgagataatcataatccataatttcatacgtgacaag
tataggttgaagtttcctgaactggagtccctcgttcatcatccgattgattatgcccgt
gttgtcaaaaagattggaaatgagatggacttaacacttgtagatctggaagggctttta
ccttctgcaattataatggttgtctcagtgacagcatcaacaacaagtggaaagcctctt
tctgaggaaaatttgaaaaaaacagttgaagcttgtgacagagcccttacgctcgatgcc
gcaaagaagaaagtgcttgattttgtagagagtagaatgggttacattgcaccgaacctt
tctgccattgttggcagtgctgttgcctcaaaactgatgggtactgctggtggtctggga
gcacttgcaaaaatgcctgcttgtaatgttcagttacttggtgcaaagaggaaaaatctt
gctggattttctactgccacatctcagtttcgagttggctatcttgaacaaactgaagta
tttcagagcacacctccagctctgaggactagggcttgcaggcttattgctgcaaagtca
actctagcagcaaggattgattcaattagaggtgatccaactggaaaagctggacggaac
ttattagaagaaattcgtaagaagattgagaagtggcaagaaccacctcctgcaaagctt
ccaaagccacttcccgttccggactctgaacctaaaaagaagagagggggtcgtcggctt
cgtaaaatgaaagaaagatatgcgcaaactgatatgatgaagcttgcaaaccggatgcaa
tttgggattccagaggagagctctttaggtgatggcttgggggaaggttatggcatgctc
ggacaggcaggaagtggcaagctgcgtgtctcagctggacaaaacaaacttgctgctaaa
gtggcgaagaaattcaaggagaagagctatggtagcagcggtgcaacttcaggattgaca
tctagtttggcatttacaccagttcagggaatagagttgtcaaatccacaggcccaaggg
aacccgcttggaggtggaactcaaagtacctacttttctgagaccggtacattttcaaag
atccggaggacccaatag
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