Panicum virgatum (switchgrass): 120683027
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Entry
120683027 CDS
T07260
Name
(RefSeq) SWI/SNF complex subunit SWI3A-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120683027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120683027
03036 Chromosome and associated proteins [BR:
pvir03036
]
120683027
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120683027
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120683027
PBAF complex
120683027
GBAF(ncBAF) complex
120683027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SURF2
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
120683027
NCBI-ProteinID:
XP_039820973
LinkDB
All DBs
Position
7N:34391394..34399026
Genome browser
AA seq
790 aa
AA seq
DB search
MSPPAAGAAATSGDGPPSSPRELYTIPASSGWFRWDGIHETERRALPEFFGGAGGAGFGT
ATRNPRIYREYRDFIIAKYREDPARRLTFTEVRRALVGDVTLLRKVFAFLDASGLINFSA
SGPASRQQEVGVVVEAPVGLQVTPRPPASYFAEEKRGGAGGEKENGFRLPPLTSYSDVFG
EWAPGKAPICGFCGEECNDEKVETLKDGFKVCSKCSKSNNDNEEEANKCPGDKKENVDNH
ASSPWTDAETLLLLEGVLKHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHMLGTINGKS
VSRLHMNQATDGKMNQHLIKDSSSNSTEKVDGMQIDGNEDSADKTGEEHPTKRRRLFSSM
DATTSLMEQLALLTTSTSPDVVAAAADAAIKALGNENPQARKAFLLSEREFKTKAFASNH
VQQINHKVGNKDMEMHGQTGSDKKLEKKFIASAYQVRAAVATAIGVAAARAKMLADQEER
EMELLMASIIETQLRKMQYKIKHFEELESVMEQEYTAMQQMQGSLMNEWLKALEQAFRAG
VSLPRDELLIKLFLNKATGHELPEREKESYARSRACRLALIDHAVARKKPPLNAFKPHPE
HKSKLVCNITGDTVNKSEEHIWKHINGKRFLNKLEKLEEQMASGEMANGETAKSNEMEKK
SKSSKKDKKDKKGKKKTNVASPSVPREPKPEMDDSDDPDFWVPPVGSRWDDDDGKDRWES
SPGKNDSAKNEGGSDDDDGGDNDDGNDDDMADKDDAESRELASSRTKRMSLEAVGPSSFA
SRKKKPKKEQ
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccggcggccggcgcggccgccacctccggcgacgggccgccgtcgtctccg
cgcgagctctacaccatcccagcctcatccggttggttccggtgggacgggatccacgag
acggagcgccgcgcgctgccggagttcttcggtggggccggcggcgccgggttcgggacg
gcgacgcggaacccgcggatctaccgcgagtaccgcgacttcatcatcgccaagtaccgg
gaggacccggcgcgccggctcaccttcaccgaggtccgcagggcgctcgtcggggacgtc
acgctcctccggaaggtcttcgccttcctcgacgcctccggcctcatcaacttctcggcc
tcgggccccgcgtcgcggcagcaggaggtgggggtcgtcgtggaggcgcccgtggggctg
caggtcacgccgcggccgccggcgtcctacttcgccgaggagaagcggggaggggcgggc
ggggagaaggagaacgggttccgcttgcccccgctgacctcgtacagcgatgtgtttggc
gaatgggcgcctgggaaggcccctatatgtgggttttgcggcgaggagtgcaatgatgag
aaggttgagacgttgaaggatggttttaaagtatgttcaaagtgttccaaaagcaataat
gataatgaggaagaagcaaataaatgtcctggtgacaaaaaggagaacgtggacaaccat
gcttctagtccatggacagatgcagagacattactccttttagaaggagtcctaaaacat
ggagatgactgggatcttatcgcccagcatgtccgcacaaagaataaatcagaatgcata
gcaaggcttattcagttaccttttggtgaacatatgctgggcacaataaatggtaaatct
gttagccggctccacatgaaccaggcaactgatggaaaaatgaatcagcaccttataaag
gactcttcaagcaattcaactgaaaaggttgatggcatgcaaattgatggaaatgaagat
agtgctgataaaacaggagaagaacatcctacaaaacgcagacggttattttcttcaatg
gatgctaccacttcattaatggagcagttagcactcctgaccacatcaacgagcccagat
gttgttgctgcagctgctgatgctgcaattaaagctttgggcaatgaaaatccccaagca
aggaaagcctttctccttagtgagcgagaatttaagactaaggcattcgcttcaaaccat
gtccaacagatcaatcacaaagttggcaataaggatatggaaatgcatggacagactggt
tctgataagaagctggaaaagaagttcattgctagtgcatatcaagtgagggcagctgtt
gctaccgctattggtgtagctgctgcccgtgctaaaatgcttgcagaccaggaggagcga
gaaatggagctcctaatggcatcaataatcgaaactcagctaaggaagatgcagtacaag
atcaaacactttgaggagctagagtcggtcatggagcaggagtacaccgctatgcagcaa
atgcagggatccctaatgaatgaatggctaaaggccctggagcaagcattccgggctgga
gtgtcactgccgagagatgaattgctcataaagctgttcctgaacaaggcgacggggcac
gagctgccggagcgggagaaggagtcctacgcgcggtcccgcgcctgccgtctcgcgctt
atcgaccacgccgtcgcgcgcaagaagccgccgctcaacgccttcaagccccaccccgag
cacaagtcgaagctggtatgcaacattacaggggatacagttaacaagtcggaggagcat
atatggaagcacatcaacgggaagagatttcttaacaagctagaaaagctagaagaacag
atggcttctggtgagatggctaatggagaaactgcaaagtcaaatgaaatggaaaagaag
agcaagtcaagcaagaaggacaaaaaggacaagaaaggcaagaagaaaactaatgttgcc
agtccttctgtgccacgagaacctaaaccagagatggatgattcggatgatccagatttt
tgggtgcctcctgtcggaagtcgctgggatgatgatgacgggaaagacagatgggagtcg
tcaccagggaagaatgactcagcaaagaatgaaggtggttctgatgatgatgacggtggt
gataatgacgatggcaacgatgatgatatggctgacaaggatgatgctgaatcaagggaa
cttgcttcgagcaggacaaagcgaatgtcactagaagcagttgggccaagtagcttcgct
tcaaggaagaaaaaacccaagaaggagcagtaa
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