KEGG   Panicum virgatum (switchgrass): 120683083
Entry
120683083         CDS       T07260                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    120683083
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120683083
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     120683083
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     120683083
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 120683083
NCBI-ProteinID: XP_039821034
LinkDB
Position
7N:31661759..31666124
AA seq 128 aa
MSWAGPDEILLSTSLAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGEQ
YCDVPLGLYVIRGENVVLIGELDREKEELPAHMTCVSEAEIRKAEKAERDARDLKGTMRK
RMEFLDFD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcgtgggccgggcccgacgagatcctcctctccacctccctcgccggcttcttggac
aagaagcttattgtgctgcttagagatggacggaaactgctcggcaccctgtgctcattt
gatcagtttgcaaatgttgttcttcagggtgcttgtgaacgagtaattgttggggagcaa
tattgtgatgttcctcttggtctttatgtgatccggggagagaatgttgttttgatagga
gaattggaccgcgaaaaggaggaactccctgctcacatgacatgtgtctcagaagcagaa
attagaaaggctgagaaggcagaaagggatgcaagagacttgaaaggcacgatgaggaaa
cggatggagttcctagacttcgactag

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