Panicum virgatum (switchgrass): 120683083
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Entry
120683083 CDS
T07260
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120683083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120683083
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120683083
mRNA degradation factors
5'-3' decay
Lsm complex
120683083
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
120683083
NCBI-ProteinID:
XP_039821034
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All DBs
Position
7N:31661759..31666124
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AA seq
128 aa
AA seq
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MSWAGPDEILLSTSLAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGEQ
YCDVPLGLYVIRGENVVLIGELDREKEELPAHMTCVSEAEIRKAEKAERDARDLKGTMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgggccgggcccgacgagatcctcctctccacctccctcgccggcttcttggac
aagaagcttattgtgctgcttagagatggacggaaactgctcggcaccctgtgctcattt
gatcagtttgcaaatgttgttcttcagggtgcttgtgaacgagtaattgttggggagcaa
tattgtgatgttcctcttggtctttatgtgatccggggagagaatgttgttttgatagga
gaattggaccgcgaaaaggaggaactccctgctcacatgacatgtgtctcagaagcagaa
attagaaaggctgagaaggcagaaagggatgcaagagacttgaaaggcacgatgaggaaa
cggatggagttcctagacttcgactag
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