Panicum virgatum (switchgrass): 120683120
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Entry
120683120 CDS
T07260
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 27-like isoform X1
KO
K11851
ubiquitin carboxyl-terminal hydrolase 30 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120683120
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120683120
04121 Ubiquitin system [BR:
pvir04121
]
120683120
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120683120
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120683120
Membrane trafficking [BR:
pvir04131
]
Autophagy
Mitophagy
Other mitophagy associated proteins
120683120
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120683120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
Peptidase_M54
Motif
Other DBs
NCBI-GeneID:
120683120
NCBI-ProteinID:
XP_039821076
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All DBs
Position
7N:29609602..29624260
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AA seq
527 aa
AA seq
DB search
MGKFMPDNPLVSPSEVNRHHYSLAAIAVGLGLGVAGLCKALYSGSSIPWVSPRNLFLGSG
RVYYVGGLRNLGNNCFLNVILQALASCDSFVSFLDNLLATDGLLPEEKAERMPLLLALCS
LLQDLSIVRDERIVLNPHGVMHALSFYVSHFNLTRQQDASEAFLHLLISLRDEFSHSYVP
HRSSLADITLSHSKVYKQREGSQPECKRWKQNLFGPFDGTIGSILSCRNCSSVLSLDFQN
FQCLPLSPVLNTNGDITSGCSLVDCLKYFTVVEHLDNYRCDRCWHITAAKYLSLKSEADE
EKVSKLNTCVDYGTCSCRGIFSPEEIPCSSPSRATKQLIIVQCPKILCIHLLRASVSLDG
EPIKHQGHISFPLLLNLSPFAGGASSIGQGPGPLAMKVQRDGQQALHLYRQLNMQMSLNV
IPTGGNSIHMANADVASSSSSSLQPSPSSSRSKLYGLSAVVEHYGKCGGGHYAVYRRIAS
NPDPEDPGQPLACLGKRWFYISDGHVSEVSEDDVLGAEATLLFYERL
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggggaagtttatgcctgacaatccactggtatctcctagtgaagtaaatagacatcac
tatagtcttgcagccattgctgttggcttgggactaggagttgctgggttatgcaaggca
ttgtatagtggttcgtccataccatgggtctctccgaggaatttatttttgggatcaggg
agagtatactatgttggaggtttacggaatcttggcaacaattgctttcttaatgtcatc
ctgcaggcacttgccagctgtgatagttttgtttcctttctagataatctgcttgcaact
gacggcttgctacctgaagaaaaggctgaaagaatgcctcttcttcttgctctatgttct
ctcttgcaagacttgagcatagttcgagatgaaagaattgtgttgaatccacatggagta
atgcatgctttgagtttctatgttagtcacttcaatttgaccagacagcaggatgcttcg
gaagcttttcttcatcttttgatctcactgcgagatgaattttcccatagttatgtacca
cataggagttctctggcagacatcactctgtctcactctaaagtatacaagcaaagggaa
ggtagccagcctgaatgcaagcgctggaaacaaaatctatttggcccatttgatgggaca
atcggcagcatattatcttgcagaaactgttcatctgtgctatcgttggacttccagaat
ttccaatgcctgcctctctcaccagtgcttaacacaaatggagatattaccagtgggtgt
agtttggtggattgcctaaagtacttcactgtggtggaacatcttgacaattatcgttgt
gatcggtgttggcatattactgctgccaagtatctatctctcaaatcagaagctgatgag
gaaaaagttagcaaacttaacacctgtgtcgactatggcacttgcagttgcaggggtata
ttttccccagaggaaataccatgttcatcaccttcacgagcaacaaagcagttgattatc
gttcagtgtccgaagattttgtgcattcatttgctgcgtgcttcagttagtcttgatggt
gagcccatcaaacatcagggacatatttcttttcctttacttctcaatctatccccattt
gcgggaggtgcatcgagcattgggcaggggcctggacctttggcaatgaaagttcaaaga
gatggccagcaagctctccatctataccgacaactgaatatgcagatgagcttgaatgta
atacctactggagggaactcaattcacatggcaaatgctgatgtggctagtagttcatca
tcatcactgcagccgtcaccatcatcatcaaggagcaagttatatggtctttcagccgtt
gtggagcactacgggaaatgcggaggagggcactatgcagtttacaggagaattgcatca
aatcctgaccctgaggatccagggcaacctcttgcatgtcttggcaagcggtggttttac
atttcagatggtcacgtatcagaagtttcagaggatgatgttttgggtgcggaggccacc
ctccttttctatgaaaggttgtag
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