Panicum virgatum (switchgrass): 120683132
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Entry
120683132 CDS
T07260
Name
(RefSeq) uracil-DNA glycosylase, mitochondrial-like isoform X1
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120683132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120683132
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
120683132
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
120683132
Prokaryotic type
120683132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
PTHB1_CtH
Motif
Other DBs
NCBI-GeneID:
120683132
NCBI-ProteinID:
XP_039821093
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All DBs
Position
7N:complement(49474394..49480295)
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AA seq
304 aa
AA seq
DB search
MAPFPPTPTAPKTIADFFVRPAKRLRAAAPAAASASLSSSSSLSPEQRRRADTNLALARA
RRNLRLAESRAKASGGAAKLEELLVEETWVEALDGELRKPYALELCRFVTHERLHGPLPV
YPPQHLVFHALNTTPFHRVKAVIIGQDPYHGPGQAMGLSFSVPEGIKKPSSLGNIFKELE
KDLGCTVPSHGNLERWAVQGVLMLNTVLTVREHQANSHAKKGWEEFTDAVIKTISQKKSG
LVFLLWGNSAQSKTRLIDGTKHHILKSAHPSGLSANRGFFGCRHFSKTNQILEKLGLSAI
DWQL
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgttccctcccaccccgaccgcgcccaaaaccatcgccgacttcttcgtgcgc
cccgccaagcgcctccgcgccgccgctcccgccgcggcgagcgcatccctctcctcctcc
tcctcgctctcgccggagcagcgccgccgcgccgacaccaacctcgcgctcgcccgcgcg
cgccgcaacctccgtctcgccgagtccagagccaaagcgtcggggggcgccgcgaagctg
gaggagctcctcgtggaggagacgtgggtggaggcgctggacggggagctgcgcaagccc
tacgcgctcgagctctgccgcttcgtcacccacgagcggctgcacggcccgctgcccgtc
tatccgccgcagcacctcgtcttccacgcgctcaacaccaccccgttccaccgcgtcaag
gctgtcatcattggccaggatccatatcatggccctggtcaggccatgggattatctttc
tcagtaccagaggggataaaaaaaccttccagcttaggtaacatatttaaagagctggaa
aaagacctaggttgcactgtgccatcgcatggaaatttggaaagatgggctgtgcagggt
gttcttatgctcaatactgtactaactgtgagggagcatcaagcaaactcacatgccaag
aaaggatgggaggagtttactgatgctgttattaagaccatatcacaaaagaaatcaggg
ctagtctttcttctttggggaaattctgctcaatcaaagacaagattgattgacggaaca
aaacaccacattttgaaatcagctcacccctcaggcctgtctgcaaaccgaggtttcttt
ggatgcaggcacttctccaaaacaaatcagatcctagagaagctgggactatctgcaatc
gattggcagctatag
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