Panicum virgatum (switchgrass): 120683155
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Entry
120683155 CDS
T07260
Name
(RefSeq) DNA replication ATP-dependent helicase/nuclease JHS1-like
KO
K10742
DNA replication ATP-dependent helicase/nuclease Dna2 [EC:
5.6.2.3
3.1.-.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120683155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120683155
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120683155
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
120683155
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
120683155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dna2
AAA_12
AAA_11
AAA_30
AAA_19
UvrD-helicase
Viral_helicase1
Cas_Cas4
Dna2_Rift
ResIII
nSTAND3
PhoH
SLFN-g3_helicase
PRIMA1
Motif
Other DBs
NCBI-GeneID:
120683155
NCBI-ProteinID:
XP_039821120
LinkDB
All DBs
Position
7N:43249932..43273889
Genome browser
AA seq
1283 aa
AA seq
DB search
MPPKKRAASSKKPPPSQPSQPAKFGILHFFERQTQASQNAKRQKPDPPPPPPPPPPPPPP
EEERSEVSPEVTKALAPKRVRFSPGMLIKQSQDDGAAEVVTWKVSPVNHRLGTAKSRPFL
GVSLHPCSNNEKNSSLEAMKKWHSSPLGLSRCTASGRNSGVIGSALAGCDGVEDSQSPFR
TPPSLSYGCSEQLNSGATSAGGLEPLGAGQHKKALLDLLDQVEDAIMEEELPVDIGNKGG
QATNEDNTNNNCSSVADVGLTTPSAKTADAPPLDSFLVLEVSEKHKTGDSACDCYPVKVL
RLLNEHSGKECAVHLLDEWFHSLVGPGDTVNVIGEFSDQGKCIVDHDNNLVIVHPELLIS
GTRVASSFHCPRRSVLDHRLKSNEYSTSALIGTLLHQVFQAGLLEDAPSQQFLEQQAKEV
LLKNIESLYACEVNESNLYSTLIEVIPKILNWLKCFLKGSKCSSVDFGHTEGRKTVGVTE
VMDIEEMAWAPRYGLKGMIDASVISRVNSCNGGSHNKIMPLEFKTGKGTSGQTAMEHSAQ
VILYTLLMTERYLSKDIDSGLLYYLHTDQTLGIKVKRSDLIGLIMRRNELVAEILKASIS
QSFPPMLQSPSTCNGCRHLNSCAIYHKAHGGNAATSGLGDLFDNLVNHLTVAHHNFLKQW
DRLIDLEARASQGKKKNIFQPYHSNSGSGDCTPSYFALDIKNGHLIDSSGKSKRYIYNFV
YHKTQPETIDQSDAQCESLDFSLKCGDPVVLSTKSGRIAVANGSIRDISRSHITVSLPRR
LRIPDSNSLSEPEDLKREIWRIDKDEFSSSFAIMRLNLVQLFAQNPQKSHLRNLIVDLEA
PRFDSGGMFSQDPALSYIRSLPNLNNDQQRSLHKILGAKDYALILGMPGTGKTYTMVHAV
KSLLIRGESILLTSYTNSAIDTLLMKLKTEGVDFIRIGRHEAVHPDVRDHCLSTAEVQSV
DAIKARMDQVQVVGVTCLGIYHPLLAHKKFDTCIMDEAGQITLPVSLGPLMLATKFVLVG
DHYQLPPLVQSSEARENGMGVSLFWRLSEAHPQAISALRCQYRMSSGIMELSNSLIYGNR
LCCGSLEIANAKLKFSGRETVQLKLKEILNPNRAVIFANTDQIPALEAKDHRTVNNPTEA
HIISWITKELLRRGVPQDDIGIITPYNAQVNLIQQCTDGLIEVHTIDKYQGRDKECIVVS
FVRSTANSRASGASLLGDWHRINVLLTRAKKKLIMVGSRGTLSTIPLLRLLVDKIAEIGA
LLDLTNNDVHSLRELRGSRLNEQ
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atgcctccgaagaagcgcgccgcctcttcaaagaagccgccgccgtcgcagccatcgcag
cccgccaagttcggcatcctccacttcttcgagcgccagacccaggcctcccagaacgcc
aagcgccagaagcctgacccccctccgcccccgcctcctcctcctccgccgccgccgccc
gaggaggagcggtcggaggtctcgccggaggtcaccaaggcgctggcgcccaagcgggtc
aggttttcgcccggaatgttgattaagcagagccaggacgatggggccgcggaggtggtg
acttggaaggtctcgcctgtgaaccatcgcctgggtacggcgaagtcgaggccatttctg
ggggtgtcgcttcatccgtgctcaaacaacgagaaaaattcctcgctagaggctatgaag
aagtggcattcatctccgttgggcttgtcgaggtgtactgcttcagggcgtaattcaggt
gttattggatccgctctagctggctgtgatggtgttgaggattctcagagcccattccgg
actccgccatcgctttcctatggttgcagtgagcaattgaacagtggtgctacttctgcg
ggaggacttgaaccgttgggagcagggcagcacaaaaaggcattacttgatcttttagat
caagttgaggatgctattatggaagaagaattgcctgttgatattggaaataaaggaggg
caagcgacaaatgaggataataccaacaataactgttcttctgttgccgatgttggttta
actaccccatctgcgaaaactgctgatgccccacccttggatagttttcttgtattggag
gtctcagaaaaacataaaactggtgattcagcatgtgattgctatcctgttaaggtcctg
cgcctgctgaatgaacactctgggaaagaatgtgccgtgcatttgcttgatgagtggttc
catagtcttgttgggcctggtgatacagtgaatgtcattggagaatttagtgatcaagga
aaatgtattgttgatcatgacaacaatcttgttatcgtccatccagagttactcatttct
gggacgcgggttgcttccagcttccattgccctagaagatctgtactggatcacagactg
aaaagcaatgaatattcaaccagtgccttgattggtactcttcttcatcaagtctttcag
gctgggctacttgaggatgctccttcacagcaattcttggaacagcaagcaaaagaagtt
cttctaaaaaacattgagagtttatatgcatgtgaagtcaatgaaagcaacctgtactcc
acgcttattgaagtaatccctaagatattaaactggctcaaatgctttttaaagggttca
aaatgctccagtgttgattttggacatactgaagggagaaagactgttggggtgactgag
gtgatggatattgaggaaatggcatgggccccaagatatggtttgaaagggatgatcgat
gcttctgtaatatcaagggttaactcatgcaatggtggctcacataataaaataatgcca
ctagagttcaaaactggtaaaggaactagtggtcagacagctatggaacactctgctcag
gtgatattgtacacactattgatgacagagagatacttgagtaaagatattgactcgggt
cttctgtattatcttcacacagaccagacattgggaattaaagtaaagaggtctgattta
attgggctaataatgcgccgcaacgagcttgtcgcagagatcctaaaggcatcaatttca
cagagttttcctccaatgttacagagcccatcaacttgtaatggatgtcgacacctgaac
tcttgtgccatataccacaaggcacatggaggcaatgctgcaactagcggtcttggtgat
ctatttgacaaccttgtgaatcacttgacagtcgcgcatcataactttcttaaacaatgg
gatagattgattgatctcgaagctagagcttctcagggaaaaaagaagaatatcttccag
ccctatcattcaaattctggaagcggggattgcacaccatcttattttgcccttgacata
aaaaatgggcatttgatagattcttcaggaaaaagcaaaagatacatatacaattttgtt
taccataagacgcagcccgaaactattgatcagtcagatgctcaatgtgagagcctagat
ttcagcctcaaatgtggtgatcctgtggtgcttagcactaaatctgggagaatagcagtt
gccaatggatccataagagacatcagtcgctcccatataacggtctctttaccacgccgt
ctgagaattccagatagtaattccctgtctgagccagaagacctcaaacgtgaaatttgg
cggatagacaaagatgaatttagttcttcatttgccataatgagactcaaccttgtccaa
ctattcgctcagaacccacaaaaatctcacctacggaacttgattgttgatcttgaggct
cccaggtttgatagtggagggatgtttagccaagatcccgcactatcctacatacggtca
ctgccaaatttgaacaatgaccaacaaagatcattgcataaaattctaggagcaaaggat
tatgctctaatattaggaatgcccggaacaggcaaaacatatacaatggtgcatgctgtg
aagtcattattgataagaggagaatctattttgctaacttcatatactaattcggctatt
gatactctgctcatgaagttgaagactgagggtgtagattttattcggattggaaggcat
gaagccgtacatcctgatgtcagggatcactgcttgtcaacagctgaggtacaatcggta
gatgcgattaaagcaaggatggatcaggtgcaggttgttggagttacttgtttgggaata
taccatcccttattagcacacaagaagtttgacacatgtatcatggatgaagctggacaa
atcacattaccggtatcgttgggaccgttgatgcttgcaactaagtttgttctagtagga
gaccattaccaacttcctccacttgtccagagctctgaagctcgagaaaatgggatgggt
gttagcctattttggaggttatcagaagcacatcctcaggcaatctctgcactgcggtgc
cagtatcgcatgtcatccggtatcatggagctgtcgaattcattgatttacggcaatagg
ttgtgctgtggttcattggaaattgcaaatgccaaactaaagttttctggtagagaaaca
gtgcaattgaagttgaaagagatcttgaaccctaatagggctgtcatctttgccaacaca
gatcaaatcccagcacttgaggcaaaggatcacagaactgtgaacaatcccacagaagca
cacataatttcttggatcaccaaagaattgctaaggagaggtgtacctcaagatgatatt
ggtatcataaccccatacaacgcccaagtgaatctcatccagcaatgcactgatggtttg
attgaggttcacacaatagataaataccagggtagggataaggaatgtatagtagtatct
tttgtgcgctccactgcaaattccagggctagtggtgcttcgttgcttggggattggcac
aggatcaatgttctattgacacgtgcaaagaaaaagctcatcatggttggatcacgtgga
acactttcgacgatacctttgttgaggcttcttgttgacaagatagctgagattggtgcc
ctgttggacttgacaaataatgatgtgcattctcttcgagaacttagaggttcacgtttg
aatgaacaatag
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