Panicum virgatum (switchgrass): 120683212
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Entry
120683212 CDS
T07260
Name
(RefSeq) cryptochrome-1-like isoform X1
KO
K12118
cryptochrome 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
120683212
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Motif
Pfam:
FAD_binding_7
DNA_photolyase
Cryptochrome_C
Motif
Other DBs
NCBI-GeneID:
120683212
NCBI-ProteinID:
XP_039821171
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Position
7N:32378009..32382281
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AA seq
714 aa
AA seq
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MSVSSPSMCGGGETGKRIVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWSPEEDGPYHP
GRVSRWWISQSLQHLDASLRRLGAGKLVTRRSADAVVALLQLVRDTGATHVYFNHLYDPI
SLVRDHRLKEMLTAEGIVVNSFNADLLYEPWEVVDDEGQPFTMFAPFWNRCLSMPYDPPA
PLLPPKKINSGNLSMCPSDDLIFEDESERGSNALLARAWTPGWQNADKALTAFLNGPLAD
YSVNRKKADSASTSLLSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSI
GLREYSRYLSFNHPSSHERPLLAHLRFFPWVVNECYFKIWRQGRTGYPLVDAGMRELWAT
GWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDGRELD
RIDNPQFEGYKFDPHGEYVRRWIPELARLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPI
VELDAAKARLQEALSEMWQLEAASRATMNNGMDEGLGDSSEVPPIEFPQELQMEIDRQPA
QATANVPMTARRREDQMVPTMTSSLNRAETEVSADLGNSEDTRAQVPFHAHFEPRVERED
AIQNAEGPAPRINGVHQHNIFQQPQPRRREAVAPSVSEASSSWTGREGAVVPVWSLPAAS
GHSETFAADEADVSSRSYLDRHPQSHRLMNWSQLSQSLTTGWEVENSVQPNLIG
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtctcgtccccgtccatgtgcggcggcggggagaccgggaagaggatcgtggtg
tggttccggagggacctcagggtggaggacaacccggcgctagcggcggcggcgcgcgcg
ggaggggaggtggtgccggcgtacgtgtggtcgccggaggaggacggcccttaccatccg
gggcgcgtgtcccggtggtggatcagccaaagcctgcagcacctggacgcctcgctccgc
cggctaggcgctggaaagctcgtcacgcggaggtcagccgacgccgtcgtcgcgctgctc
cagctggtccgcgacaccggcgccacgcacgtctacttcaatcatctctacgaccctatc
tcactggtcagggaccaccggctaaaggagatgctgacggctgagggcatcgttgtgaat
tctttcaatgcggatctgctgtatgagccatgggaagttgttgacgatgaagggcagcca
ttcaccatgtttgccccattctggaacaggtgcctcagcatgccgtacgatcccccagcg
ccgcttctgcccccgaagaagatcaattcaggtaacttatcaatgtgcccatccgatgat
ctgatctttgaggatgaatcagagaggggaagcaacgctcttctggcccgagcatggaca
ccaggatggcagaacgcagacaaggcgctaacggccttcctcaacggtcctctggctgac
tattcagtgaaccgcaagaaggctgatagtgcaagcacatccctactttcacctcacctc
cattttggtgagcttagcgtgcgaaaggtcttccacctagttcgaatgaaacagcttgtg
tggagcaacgagggcaaccacgctgctgaggaaagctgcaccctgttcctgcgttccatt
ggcctgcgggagtactcccgctatctgagcttcaaccatccaagcagccatgagaggccc
ctcttggcacacctcaggttcttcccctgggtagtcaatgagtgctacttcaagatttgg
aggcagggaaggactggatacccgcttgtggatgctggcatgagggaactgtgggcgaca
gggtggttgcatgaccgaatacgtgtagtggtgtcaagcttctttgtcaaggtccttcaa
cttccatggcgatggggtatgaagtacttctgggacactttactggatgcagatcttgag
agcgatgcactgggctggcagtacatcactggctctctccctgatgggcgagagcttgac
cggattgacaaccctcagtttgaaggctacaagtttgacccgcatggggagtatgtccga
cggtggattccggagcttgcaaggctgccgacagaatggatacatcacccatgggatgca
cctgtttctgtgctacaagctgcaggaattgagttgggctccaactatcctctccccata
gttgagctagacgcagccaaagccaggctgcaagaagccctgtcagaaatgtggcagctg
gaagctgcatcaagggccacaatgaacaatggaatggacgaaggtctcggtgactcctcg
gaggttccaccgattgagtttcctcaagaattacagatggaaatcgatcggcagccagcc
caggcaacggccaatgtgccgatgactgctcggaggcgtgaggatcagatggtgcctacc
atgacgtcttcactgaacagagctgaaacagaggtttctgccgacctggggaacagtgag
gacactagagcacaggttccgtttcatgcacatttcgaacctcgagttgagagggaagat
gcaatccaaaatgcagaaggccctgctcctagaatcaatggagttcaccagcacaacatc
tttcagcaacctcagcctcgtaggcgagaagctgttgcgccatccgtgtcagaggcttcg
agtagctggaccgggagagaaggcgctgtagtcccagtttggtcacttcctgcagcgtca
ggccattcagaaacttttgctgctgatgaagctgacgtttctagtaggagttatttggat
aggcatccacagtcgcaccggttgatgaactggagtcagttatcccagtcattgacaaca
ggctgggaagtggaaaattccgtgcagccaaacttaatcggttag
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