Panicum virgatum (switchgrass): 120683980
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Entry
120683980 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase ATL6-like
KO
K10664
E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120683980
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120683980
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
ATL proteins
120683980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_UBOX
zf-RING_5
Prok-RING_1
zf-C3HC4_3
Arc
zf-RING_16
Tmpp129
PHD_NSD
Prok-RING_4
PHD
RINGv
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
120683980
NCBI-ProteinID:
XP_039821999
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All DBs
Position
7N:32115374..32117155
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AA seq
396 aa
AA seq
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MMGTRELLLVLSLLGAGMAVGDAQPPPSPPPQQTPPPPPRQTPFGRTMSTFITVAISVFF
FLLFVCAYVNQCRLADPGARGEAAAAAAAGPGGASGRGKRGLDPAVVATFPIVSYREVVA
HKIGKGVLECAVCLTAFEDDDDLRLLPHCSHAFHPECIDPWLQSRVTCPLCRANLEKPAP
AVAPPSPREQVAVAQRRPSPPPEAVAIPVLGEGSEDEGDSDEDDRKEEAIELEMLRSARR
AARMPRSHSTGHSLFAAAAAAAEEGDHERFTLRLPEHVREQVLRSRRLRHATSLINLSDM
SSEGSFRGGRRLGGGGGGGGGGGGGGGGSFGNGNGNGGSSHGGRRWQSFLARTVSWARGG
GDGSVRKGWDGSTRRGRDDSESSRKGSPTPPPAGRP
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgatggggacgcgggagctgctcctcgtcctctccctccttggcgccggcatggccgtc
ggcgacgcgcagcctccgccctcgccgccgccacagcagacgccgccgccgccgccgcgg
cagacgccgttcgggcgcaccatgtcgacgttcatcacggtggccatcagcgtcttcttc
ttcctgctcttcgtctgcgcgtacgtcaaccagtgccgcctcgcggaccccggcgcgcgc
ggggaggccgcggcggcggcggcggcggggcccgggggcgcgtccgggagggggaagcgc
gggctggaccccgcggtggtggccacgttccccatcgtgtcctacagggaggtggtggcg
cacaagatcggcaagggcgtgctcgagtgcgccgtgtgcctcacggcgttcgaggacgac
gacgacctccgcctgctgccgcactgctcccacgccttccacccggagtgcatcgacccc
tggctgcagtcgcgggtcacctgtccgctctgccgcgccaacctcgagaagccggctccg
gcggtcgcgcccccgtcgccgcgggagcaggtggcggtggcgcagcgccggccctcgccg
ccgccggaggccgtggcgattccggtgctgggcgagggctcggaggatgagggggacagc
gacgaggacgaccggaaggaggaggccatcgagctggagatgctgcgcagcgcgcgccgc
gcggcgaggatgccgcggtcgcactcgacgggacactcgctcttcgcggcggcggccgcc
gccgccgaggagggcgaccacgagcggttcacgctgcggctcccggagcacgtccgggag
caggtgctccggtcccgccgcctgaggcacgccaccagcctgatcaacctctccgacatg
agctccgagggcagcttccgaggcggacgccgcctgggaggaggaggaggaggaggagga
ggaggaggaggaggaggaggaggaagcttcggcaacggcaacggcaacggcgggagcagc
cacggcgggcgccggtggcagtcgttcctggcccggacggtctcgtgggcgcgaggcggc
ggcgacgggtcggtgcggaaggggtgggacgggtccacgaggaggggaagggatgacagc
gagtccagccggaagggctcgcccacgccgccgcccgcgggccggccgtga
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