Panicum virgatum (switchgrass): 120684376
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Entry
120684376 CDS
T07260
Name
(RefSeq) nuclear pore complex protein NUP98A-like
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120684376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120684376
03036 Chromosome and associated proteins [BR:
pvir03036
]
120684376
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120684376
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120684376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
120684376
NCBI-ProteinID:
XP_039822177
LinkDB
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Position
8N:complement(33197..39136)
Genome browser
AA seq
1019 aa
AA seq
DB search
MRGKEQRRMQATAGLGRRIKPRRIGAPPFIETDRRPVSGSPSPLRLSERLSLFLSKREEG
TPPPPPPVIERGLAFPCLALPPLARRSIVIISSAAAAMFGSTNPFGQSSTSPFGQNSFGT
QQGFGQATPAANNPFAPKPFGSPTTTFGAQTGSSLFGTTSTGAFGQQQSTPTFGTTSTAA
FGQQQSTPTFGTPSSSPFGSSPAFGASPTPAFGATSSTFGSGSLFGQKPSFGGFGSSPSQ
SSPFGGTFQQTQPTFGSSTFGTSTTPTFGTTTSPAFGVTTPAFGTTTTPAFGATTTPAFG
STSPSLFGASSTPAFGSSAPGFGTSATTAFGVSSSTTGFGSSSTPSFGTSTNAFSFGPSP
SFGQTTVASGSSPFGTTSPFGVQTPAFGSQTAAPTFGQAQFGNQAGGTRIKPYAQTPDVD
GATSGTQPAAKLDSISAMPEYKDKSHEELRWEDYQRGDKGGPNPSGTPTVMPTFPSSTPL
NTFTTNSAFSQTTPNPFSSNNPFAKNGSTSASLFNTSFNNTSVASSSPFTSSTSTTMFGQ
TGVSAFPASSSSSLFPNAAPAFASSSLFGTSAPNNSSLFGTGLSLANTQSAPLFQSSPAF
TQQPSSTPAFSSGNLFSAANTSSLFGSGPSLFTTPTFLQSAPAQTSSMFSFQPPPQPASS
GGFPVFSNIANQALIGQQTPSQSNMVMQPAPVSNPFGTLPAMPQMSIGNGGSSPSVQYGI
SSLSVAEKPLPSRTLSATVPRHLLQRRIKLLPRKYNPISDGKVPFFADDAESPATPKADA
FFIPRENPRNLIIRPLEQWPSRSGINRQSVPKDSASLDKYEDASTESARDKAVKPPSSNP
SLVENGKQHEPSNHGNGKGTSVEGLLPKLPQADYFTEPNLEELAAKERGEPGYCGRVEDF
VVGRHGYGSIKFLGETDVRGLDLESIVEFNNREVIVYKDDSKKPPVGEGLNKAAEVTLLN
IKCMNKKTGDEYRDGPRVDRYRQMLMKKAEEQGAEFVSFDVAKGEWKFRVEHFSAYGLW
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcaaggagcagcgtcggatgcaagctactgcgggtttaggtcgccgtataaag
ccgcggcgcatcggggccccacctttcattgagacagacaggcgccccgtatctggatcc
ccttcgcctctgcggctctctgagcgcctctccctcttcctctccaaacgagaagagggc
accccgccgccgccgccgccggtgatcgagaggggactagccttcccttgcctcgcgttg
cctcctctcgccaggagaagcatcgtcatcatcagttcagcagctgcagccatgttcggc
tccaccaacccatttgggcagtcatcaaccagcccatttggccagaactcattcggaacc
cagcagggatttggccaggctacccctgctgctaacaacccctttgcgccaaaaccgttt
ggcagcccaaccacaacttttggggcacagactggaagctcacttttcggcactacatcc
actggtgcctttggccagcagcagtccactcccacatttggcactacatccactgctgcg
tttggccagcagcaatccactcccacatttggtactccgtcctcctctccgttcgggagc
tctccagctttcggtgcatcgcccactcctgcctttggtgctacatcctctacttttggc
tctggatctttatttggacaaaagccaagttttgggggttttggatcatctcctagccag
tcaagtccttttggtggcacgttccagcaaacacagccaacatttggcagcagcactttt
ggtacatcaactacaccaacattcggtaccacaacttcgccggcatttggtgtaactaca
ccagcctttggcaccacaactacaccagccttcggcgccacgactaccccagcatttggt
tcaacatcgccatctttatttggtgcttctagcaccccggcgtttggctcatcagctcct
ggttttggaacttcagcgaccacagcatttggtgtgagtagtagtactacaggttttgga
tcttccagcacaccatcatttggcacatcaaccaatgcattcagttttggtccgtcacca
tcttttggacaaacaacagttgcctctggtagttccccctttggaacaacatcacctttc
ggtgtgcagactccagcatttggctcacagacagcagcacccacttttgggcaagcacaa
tttggtaatcaagctggagggactagaataaaaccttacgctcaaacaccagatgttgat
ggtgctaccagtggtactcagcctgctgcaaaacttgattccatatcagcgatgccagaa
tacaaagataagagtcatgaagagttgaggtgggaagattaccagcgtggagacaagggt
ggaccaaacccttctggaactccaacagtgatgcctacctttccatcatcaacaccactg
aatacttttacaacaaacagtgcatttagccaaactactccaaacccattttcatcaaac
aatccatttgctaagaatggttcaactagtgcatcactattcaacacctcatttaacaat
acatcagttgcaagttcaagcccattcacatcgtccactagtaccacaatgtttggacaa
acaggtgtttctgcatttccagcaagtagttcatcatctttgtttccaaatgctgctcct
gcttttgcttcatcttcattatttggcacgtcagcaccaaataattcaagtctattcggc
actggattgtcgttggctaacactcaatcagccccactatttcaatcatcccctgcattt
acacaacagccatcaagtacaccagctttctcctctggaaatctatttagcgcagctaat
actagcagtctgtttggcagcggaccttcactttttacaacgccaacatttctgcaatct
gcccctgctcaaacttcaagcatgttctccttccaacctccgcctcaaccagcttcttca
ggtggatttcctgttttttccaacattgctaatcaggccctcattggacagcaaactcct
agccaatccaatatggtcatgcaacctgctcctgtctcgaatccatttgggacacttcca
gcaatgcctcagatgtccatcgggaatggtggatcttctccttcggttcaatatggaata
tcgagtttgtcggttgctgagaaacctcttccgagtagaacattgtccgcgacagttcct
aggcatttattacagagaaggatcaaattgctgccaagaaaatataatccaatatcagat
ggcaaggttccattctttgctgatgatgctgaatctcctgcaacaccgaaagcggatgct
ttcttcatccctagagagaacccgaggaatctgataatccgcccactcgagcagtggccc
tcgcggagtggaattaacaggcaatcagttccaaaggattcagctagtttggacaaatat
gaagatgcatccactgaaagtgcgcgtgataaggctgtcaagccaccaagtagcaatcct
tctctggtggaaaatggcaagcagcatgagcccagcaatcatgggaatgggaagggcact
tcagttgaggggctgttgcctaagctccctcaggcagattacttcacggaacctaatctg
gaggagcttgctgccaaagaacgtggtgagccaggctactgcggtcgtgtggaggacttt
gttgtggggcgccatggctatggcagcatcaagttccttggggagacggatgtgcggggc
ctggatctggagtcaatcgtggagttcaacaacagggaggttattgtgtacaaggacgac
agcaagaagcccccggtgggtgaggggcttaacaaggctgcggaggtgactcttctgaac
atcaagtgcatgaacaagaagacaggggatgagtaccgagatggcccgcgggtggacagg
tacaggcagatgcttatgaagaaggcggaggagcagggcgcagagttcgtgtcctttgac
gttgccaagggagagtggaagttcagggtggagcacttcagcgcctacgggctctggtga
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