Panicum virgatum (switchgrass): 120684551
Help
Entry
120684551 CDS
T07260
Name
(RefSeq) oligouridylate-binding protein 1-like
KO
K13201
nucleolysin TIA-1/TIAR
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120684551
03041 Spliceosome [BR:
pvir03041
]
120684551
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
120684551
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
120684551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_PARP14_3
RRM_5
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
120684551
NCBI-ProteinID:
XP_039822338
LinkDB
All DBs
Position
8N:complement(45467187..45473019)
Genome browser
AA seq
446 aa
AA seq
DB search
MHQQRIKQAAAAAAVAAQQQQQLMQQALLLQQQQQAQPPLFPGHHPHPGLLDAPQIEPIV
SGNLPPGFDSSTCRSVYVGNIHLQVTDTLLQEVFQSIGPVEGCKLIRKEKSSFGFIDYYD
RRSAALAILSLNGKQLYGQPIKVNWAYTSTQREDTSGHFNIFVGDLCPEITDAALFAFFS
GYSTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQNAINDLNGKWLGNRQIRCNWATKGAN
AGEEKQSVDTKVDQTNGSSEAGKENLNEDGPENNPLFTTVYVGGLPHEATNNDVHLFFHS
LGVGSIEEVRVTRDKGFGFVRYSTHEEAALAIQMGNGQLIGGRPIRCSWGNKPTPPGTAS
SPLPPPAPSAFPTGVSATDFLAYQRLALSKIAANPALMGQHALKQAALGMDAGASQAIYN
GGFPGVNAAATAAAQQQQQQQQLMYF
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgcaccagcagcggatcaagcaggcggcggcggcggccgccgtggcggcgcagcagcag
cagcagctgatgcagcaggcgctgctcctgcagcagcagcagcaggcgcagccgcccttg
ttcccggggcaccacccgcaccccggcctcctcgacgcgccgcagatagaacccatagtt
agcggaaaccttcctcctgggtttgattcaagtacatgccgcagcgtgtatgttggcaat
atccatcttcaagtgacggacacgttactgcaggaagtcttccaaagtattggtccagta
gaaggttgcaagctcatcagaaaagaaaagtcatcttttggtttcatcgactactatgac
cgccgatctgctgcactagcaattttatctctcaacggcaaacaactgtatggtcagcca
ataaaagtcaattgggcatatacaagtactcagagggaggacacatcaggccattttaat
atttttgttggggatctttgcccagaaatcactgatgctgctctatttgcctttttctct
ggatactctacctgctcagatgctagggttatgtgggaccagaaaacaggacgatccaga
gggttcggttttgtttctttcaggaatcagcaggatgctcaaaatgcaataaatgactta
aatgggaagtggcttggcaaccgtcaaattcgttgcaattgggcgacaaaaggtgctaat
gctggtgaagagaaacaaagtgtggacaccaaggtggaccagacaaatggttcatcagaa
gctggaaaggagaatttaaatgaagatggtcctgaaaataacccactttttaccactgtt
tatgttggtggtcttcctcatgaggccaccaacaatgatgtgcacctgttttttcattca
cttggggttggctcaattgaggaggtccgtgtaacacgtgacaaaggctttggctttgtg
aggtacagcacccatgaggaagctgcattggcaattcagatgggcaatggccaactgatt
ggcgggaggcccataaggtgctcctggggaaacaaaccaactccaccggggacagcatct
tcgccgctcccccctcctgcaccatctgcattccccaccggcgtgtcggcaactgacttc
ctggcctaccagcgcctggccctgagcaagattgccgcgaacccagccttaatgggccag
cacgccctgaagcaggctgcgctggggatggacgctggggccagccaggctatctacaat
ggcggcttcccaggtgtcaatgctgctgccactgccgctgcccagcagcagcagcagcag
cagcagctcatgtacttctag
DBGET
integrated database retrieval system
