Panicum virgatum (switchgrass): 120684555
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Entry
120684555 CDS
T07260
Name
(RefSeq) probable indole-3-acetic acid-amido synthetase GH3.13
KO
K14487
auxin responsive GH3 gene family
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120684555
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Motif
Pfam:
GH3
GH3_C
GH3_M
DUF7350
Motif
Other DBs
NCBI-GeneID:
120684555
NCBI-ProteinID:
XP_039822339
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Position
8N:37077977..37082791
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AA seq
668 aa
AA seq
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MDLTMSTTTTSTSPEPDHDDRGHHLPSFVIPPASSPAVAMPLPPPSALPPTIPACDPHDG
PASLQLIEDLTTHAGAIQRRVLREILAMNAGTDYLRRFLGPDDAAARGADELAAAFKARV
PVVEYEDVKPYIERIANGAPSSLISSKPITELLTSSGTSGGQPKLMPSTEEELDRKTFLY
NLLIPVMNRHVAGLDEGRCMYLLFVKPEITTPSGLVARPVLTSYYKSRHFRERPDSPYAR
YTSPTAAILCPDSAQSMYAQLLCGLARRGEVLRVGAVFASAFLRAIKFLEGHWRALCEDL
RAGRVDAARVADLACQEAVAAVVARPDPALADAVAAECAAAPSWRGIVRRLWLRTKYIDV
IVTGSMAQYIPLLEFYGGGLPLVSTMYASSECYFGINLRPLDRPEDVAYTLLPNMCYYEF
VKVEKDGEEVRDGEVVDLVDVEIGAHYELVVTTFTGLYRYRVGDILQVSGFHNAAPQFRF
VHRRNVVLSVDTDKTSEDDLLRAVTAAKRLLAPLGAILSEYTAYADTASIPGHYVLFWEL
TPPPPPPPLRADDSCDAGAEAEAAARVMAACCAAVEAGLDAVYRRCRSRDRSVGPLEIRV
VGPGAFDALMDLCVSHGSSVNQYKTPRCIKHPDAIAVLEARVVGRFFSDAVPHWEPFQAA
GADEGAPA
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatctaacaatgtcaaccacgacgacgtcgacgtccccggagcccgaccatgatgac
cgcggtcaccacctcccctccttcgtgatcccgccagcatcgtcgccggcggtggcaatg
ccattgccgccgccgtcggctctgccgcctacgatcccggcctgcgacccgcacgacggg
ccggcgagcctgcagctcatcgaggacctgaccacccacgccggcgccatccagcggcgc
gtcctccgcgagatcctcgccatgaacgcgggcacggactacctccgccgcttcctcggc
cccgacgatgccgcggcgcgcggcgccgacgagctcgccgccgcgttcaaggcccgagtg
ccggtcgtggagtacgaggacgtcaagccgtacatcgagcgcatcgccaacggcgccccc
tcgtcgctcatctcctccaagcccatcaccgagctcctcacgagctctggcacgtccggc
gggcagccgaagctgatgccgtcgacggaggaggagctcgaccgcaagaccttcctctac
aacctcctcatccccgtcatgaacaggcacgtggcgggcctggacgaggggcggtgcatg
tacctgctgttcgtgaagccggagatcacgacgccgtcggggctggtggcgcggccggtg
ctgacgagctactacaagagccggcacttccgggagcggccggacagcccgtacgcgcgg
tacacgagcccgacggcggcgatcctgtgcccggacagtgcgcagagcatgtacgcgcag
ctgctctgcggcctcgcccgccgcggcgaggtgctccgcgtcggcgctgtgttcgcctcc
gcgttcctccgcgccatcaagttcctcgagggccactggcgcgcgctctgcgaggacctc
cgcgccggccgcgtcgacgccgcgcgcgtcgccgacctggcgtgccaggaggccgtggcc
gcggtcgtggcgcgcccggacccggcgctggccgacgccgtcgccgccgagtgcgcggcg
gcgccgtcgtggcggggcatcgtgcgccgcctctggctgcggaccaagtacatcgacgtc
atcgtgacggggtccatggcgcagtacatcccgctgctcgagttctacggcggcggcctg
ccgctggtgtcgaccatgtacgcgtcgtccgagtgctacttcggcatcaacctccggccg
ctggaccggccggaggacgtcgcctacacgctgctgcccaacatgtgctactacgagttc
gtcaaggtggagaaagacggcgaggaggtccgggacggggaggtggtggacctcgtcgac
gtcgagatcggcgcccactacgagctcgtcgtcaccaccttcacaggcctgtaccggtac
cgcgtgggcgacatcctgcaggtgtcggggttccacaacgcggcgccgcagttccggttc
gtgcaccgccgcaacgtggtgctcagcgtggacaccgacaagacctccgaggacgacctc
ctccgcgccgtcaccgccgccaagcgcctcctggcgccgctcggcgccatcctctctgag
tacacggcctacgccgacacggcgtccatcccgggccactacgtcctcttctgggagctg
accccgccgccgccgccgccgccgctgcgcgccgacgactcttgcgacgccggcgccgaa
gccgaggccgcggcccgcgtcatggccgcgtgctgcgccgcggtggaggccgggctggac
gccgtgtaccggcggtgccggagccgcgaccggtccgtgggcccgctggagatccgcgtg
gtgggccccggcgccttcgacgcgctcatggatctctgcgtctcccacggctcctccgtg
aaccagtacaagacgccgcgctgcatcaagcaccccgacgccatcgccgtcctggaggcg
cgcgtcgtcggcaggttcttcagcgacgccgtgccgcactgggagccgttccaggccgcc
ggcgccgacgaaggggcgccggcgtga
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