Panicum virgatum (switchgrass): 120684581
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Entry
120684581 CDS
T07260
Name
(RefSeq) serine--tRNA ligase, chloroplastic/mitochondrial-like isoform X1
KO
K01875
seryl-tRNA synthetase [EC:
6.1.1.11
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120684581
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120684581
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120684581
Enzymes [BR:
pvir01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.11 serine---tRNA ligase
120684581
Amino acid related enzymes [BR:
pvir01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
120684581
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
120684581
Prokaryotic type
120684581
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA-synt_2b
Seryl_tRNA_N
DUF3086
Ig_VWDE
Motif
Other DBs
NCBI-GeneID:
120684581
NCBI-ProteinID:
XP_039822371
LinkDB
All DBs
Position
8N:44777958..44781896
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AA seq
514 aa
AA seq
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MLTCGRFLSSSAATTTASFSPLRTLTRSLLRRPHPRLLSSASAAATTAVEPDTKGGGGGG
AGGGGGGVVRPQWKAAIDFKWIRDNRDAVADNIRSRNSAANLDLVLELYDQYLALQKEVE
WLRAERNAVANKMKGKLDPSVRQALVEEGKNLKEALIGLEEDLVELTDKLQLEAQSIPNA
THPDVPVGSEESSVVRKEVGSQRSFNFTIKDHLQLGKELDLFDFDAAAEVSGSKFYYLKN
EAVLLDMALINWAISEVSKKGFTPLITPEIVRSSVVEKCGFQPRAQNTQVYSIENSDQCL
IGTAEIPVGGIHMDSILLDSALPLKYVAYSHCFRTEAGAAGAATRGLYRVHQFSKVEMFI
FCRPEESDKWHEELITIEEDLYASLGLHFKTLDMATGDLGAPAYRKFDIEAWMPGLERYG
EISSASNCTDYQSRRLGIRYRPTPSEPPPTDAKKGKAAGGPTQFVHTLNATAVAVPRLIV
CILENFQQDDGSIVIPEPLRPFMGGLEVLSPKSK
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgctgacctgcggccgcttcctctcctcctccgcggccacaaccaccgcctccttctcc
ccgctccggaccctcacccgctccctgctccgccggccccatccccgcctcctctcctcc
gcctccgccgccgccacgaccgccgtcgagcccgacaccaaaggcggcggcggcggcggc
gcgggtggaggaggtggtggcgtcgtgaggccgcagtggaaggcggcgattgacttcaag
tggatccgggacaaccgggacgccgtcgccgacaatatccggagcaggaactccgccgcc
aacctcgaccttgtcctcgagctgtacgaccagtacctcgcgctgcagaaggaggttgaa
tggctccgagctgaaagaaatgcagttgctaacaagatgaaagggaaactagatccatca
gtgcgccaagcccttgttgaagaaggcaagaacctgaaagaggcgcttattggacttgaa
gaggatcttgttgagctgactgataagcttcaacttgaagcacagagtattcctaacgct
acacatccagatgttcctgtaggcagtgaggaaagctctgttgtccggaaggaggtagga
agtcagaggagcttcaatttcacaatcaaagatcaccttcagcttggaaaagaacttgat
ttatttgattttgatgcagctgccgaggtcagtggttcaaagttctactacttaaagaat
gaagctgttttgttggatatggcccttataaattgggctatttcagaggtctcaaagaag
ggtttcacaccactcataactccagagattgtgcggtcatctgttgttgagaaatgcggc
ttccagccaagggcccaaaacactcaggtctactcaatagagaacagcgatcagtgtctc
ataggaactgctgaaattcctgttggaggcatccacatggattcaatacttcttgattct
gctttgcctttaaaatatgtagcctattcacactgttttcgcacggaagctggtgcagca
ggtgctgctactaggggcctctatcgagtacatcaatttagcaaggttgagatgttcata
ttctgtcggccagaggaaagtgacaaatggcatgaagaacttattacgattgaagaggat
ctttatgcttcacttggacttcatttcaaaactttggatatggcaactggagatctgggt
gcaccagcttaccggaaatttgacatcgaggcatggatgccaggtctagagcgatatggt
gagatctccagtgcatctaactgcacagactatcaaagtaggcgacttggcatccgttac
cgtccaacaccctcagagcctccaccaacggatgccaagaaagggaaggcagctggaggg
cccactcaatttgtccatacactaaatgcaacagctgttgcagtgcctcgcctgatagta
tgcattcttgagaattttcaacaggacgatgggtcgattgtgatccctgagccgctaaga
cccttcatgggtggactcgaggtgctctccccaaaatccaagtga
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