Panicum virgatum (switchgrass): 120684638
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Entry
120684638 CDS
T07260
Name
(RefSeq) autophagy-related protein 13b-like
KO
K08331
autophagy-related protein 13
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
120684638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120684638
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120684638
Membrane trafficking [BR:
pvir04131
]
Autophagy
Autophagosome formation proteins
ULK complex
120684638
Atg1 complex
120684638
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
120684638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
ASNSD1-SEP
Motif
Other DBs
NCBI-GeneID:
120684638
NCBI-ProteinID:
XP_039822455
LinkDB
All DBs
Position
8N:complement(3162693..3168233)
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AA seq
599 aa
AA seq
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MAAAAAAGASEPPMVEQVITEFFAKSLHIILESRSPYDSSRNFTRPSPPSSPLSGSQPRD
RWFNLALRDCPAALENFDLWRQSNIEPLVIDIVLLQRDNTKTTSAGPGRIIERWVIKYET
SRSVNSSGNGSKNGGKKSRSSSARDHSLYRRAYNGSTVLFRSLYLVVRLLPAYHLFQELS
SSGRIRPLSLSHKISSFVEPFTRAEDAEMKHYAFAPIETLSGRLSLSVSYVPVLEVAAAP
EPTTPMATELIMDYVGSPTTDFLRKFNSLPSDGIAPASFTVNRRHSWSTEQGTGPSASSS
RMPTDNSATAYSHQLDTSSSAKNRDTVNEECYPSPPLSPSPSHSPSSYPRNPFFRYESAP
LSITTVRAGGGCSRLPPSPHRKDKQQCPFRNENLTRSPNDRSIIMKDLVRLGEVQNEKSL
QKVLSFGKDDLVYFRGLKLTRTSSKLFIMDELDERELVFAWEDKDTIIDQLSRIDLSERE
NHESSQEAGGSLTRSPDAAIGSLMRILKNAPGLRERLPTAPGAPVPQEPSSLQRVMTEEH
GRGASSSAVVPSALMRSRTAADALEELNRYKEIRELILNRGKGNPCDTKLEEKPADGDP
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggctgcagctgcaggcgcgtcggagccgccaatggtggagcaagtgatcacc
gagttcttcgccaagagcctccacatcatcctggagtcgaggtcgccctacgactcgtcg
cgcaacttcacgcggccttccccgccgtcatcgccgctgtccggcagccagccgcgtgac
cggtggttcaatctcgctctccgggactgccctgctgcgcttgagaactttgacctgtgg
cggcagagcaacattgagcctctggtcattgacattgtgctcctgcaacgtgacaatacc
aaaaccaccagtgctgggcccggcaggatcatcgaaaggtgggtgataaagtatgaaact
agcaggtctgtcaacagtagtggtaatggtagcaagaacggtggcaagaagtctaggagc
agctctgctcgtgatcatagcttgtaccggagggcatacaatggctcaacagtgttattc
cggtcactatatctggttgtcaggctattgccagcataccatctcttccaggagctcagt
tcatctggaagaatacgtccactcagcctctcacacaagatttcatcatttgttgagcca
ttcacccgtgcagaggatgcagagatgaaacactatgcatttgctccaattgaaactctg
tcgggtcgcttgagcttgtcagtttcatatgtgccagtgctggaggtagcagcagcacca
gagccaaccacaccaatggcaacagagcttatcatggattacgttggaagccccacaaca
gattttctgaggaagtttaattccctaccttcagacggcattgcacctgcatcttttacc
gtgaacaggcggcacagttggagcactgaacaaggaactggaccatccgcatcatcatca
cgtatgcccactgataattctgcaacagcatattcacatcaacttgacacatcatcatct
gcgaagaacagagatacagtaaatgaagagtgctatccatcgccacctctgtcgccatca
ccatcccattcgccttctagctacccaagaaatcctttcttccgatatgagagtgctcca
ttgagtattaccacagtgagggctggtggaggttgtagcaggctgcctccttctccacat
aggaaggataagcaacagtgcccatttcgaaacgaaaatctaacacgttctcccaatgat
agatcaataataatgaaggatttggtcaggctgggtgaggttcagaatgagaagtctttg
caaaaggttttatcttttggcaaagatgatttggtatattttcgtggactaaagttgact
cggacctccagtaaacttttcatcatggatgaactggatgaacgagagttggtttttgca
tgggaagataaagacaccatcatcgatcaacttagcaggattgatctctctgaaagagag
aaccatgaatcgagtcaagaagctggaggctcgttaacgaggtctccagatgcagcaata
ggtagtctcatgcgcatccttaagaatgccccgggactcagggaaaggctaccgacggcc
cctggtgccccagttcctcaagaaccttcttcgctccagagggtcatgactgaggaacat
ggcaggggtgcatcaagctctgcagtggtgccttccgctctgatgaggtcaaggacggca
gcggacgcgctggaggagctgaacagatacaaggagattagggaattgatactgaatcgt
ggcaaagggaatccctgcgacaccaagcttgaggagaaacccgcagatggagatccttag
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