Panicum virgatum (switchgrass): 120685341
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Entry
120685341 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120685341
03041 Spliceosome [BR:
pvir03041
]
120685341
03036 Chromosome and associated proteins [BR:
pvir03036
]
120685341
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120685341
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120685341
mRNA cycle factors
Common to processing body (P body) and stress granule
120685341
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120685341
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120685341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120685341
NCBI-ProteinID:
XP_039823130
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All DBs
Position
8N:42970265..42974651
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AA seq
629 aa
AA seq
DB search
MATSRTSWADVADAEPAPPPTVTTTTTTAPAASNGPARSSYVPPHLRNRSASASSAAAVP
SSAAAPPSRSAAGILSRPGTRGGGGGGGGGGGGGGGFGGRPRGGPRWDREPDPFAGSEPP
LPAADADGVPFDDHQNTGINFDAYEDIPVETSGRDVPAPVATFAEIDLGAALNDNIRRCR
YVRPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGPLAERPHRGAGMGM
RTAYPSALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPITQQLRDLERGVDILVA
TPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMDMPPPGVRQTMLFS
ATFPKEIQRMASDFLENYIFLAVGRVGSSTELIVQRIEFVQEADKRSHLMDLLHAQRDTG
KQMLTLVFVETKRGADSLESWLCMNGFPATSIHGDRNQQEREHALRSFKSGQTPILVATD
VAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDNNSSMARSLAEL
MQESNQEVPAWLSRYAARPSYGGGGRNRRSGGGNRFGGRDFRNDSSSFGKGSSRGGGDYY
GGGSSGGYGGSSSYGGGGYGGAGAPSAWD
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctcccgcacgtcctgggccgacgtcgccgacgccgagcccgcgccgcccccg
accgtcaccaccaccaccaccaccgcccccgcggcctccaacggccccgcccgctcctcc
tacgtcccgccccacctccgcaaccgctccgcctccgcctcctccgccgccgcggtcccg
tcctccgccgcggcgccgccctcccgctccgccgccggcatcctctcccgccccggaaca
cggggcggcggcggcggcggcggcggcggcggcggcggcggcggcgggttcgggggccgc
ccccgcggcgggccccgctgggaccgcgagccggaccccttcgcgggctccgagcccccg
ctccccgccgccgacgccgacggcgtccccttcgacgaccaccagaacacgggcatcaac
ttcgacgcctacgaggacatccccgtcgagacctcgggccgcgacgtgcccgcgcccgtc
gccaccttcgccgagatcgacctcggcgccgcgctcaacgacaacatccgccgctgcagg
tacgtgcgccccacccccgtgcagcgccacgcgatcccgatctcgctcgccggccgggac
ctcatggcctgcgcgcagaccgggtccggcaagacggccgccttctgcttccccatcatc
agcggcatcatgaggggcccgctcgccgagaggccgcatcggggcgcgggcatggggatg
aggacggcctacccgtccgccctcatcctgtcgcccaccagggagctctccatgcagatt
catgaagaggccaggaaattttcgtaccagactggtgttagggtagttgttgcatatgga
ggagcgccgattacgcagcagttaagagatcttgagaggggtgttgacattcttgtggct
acccctggccgtttggttgacttgttagaaagggcaagagtgtcattgcagtcaattaga
taccttgcacttgatgaggcagatagaatgcttgatatgggtttcgaaccacaagttaga
agaattgttgagcaaatggacatgcccccaccaggtgtcaggcagacaatgctgtttagt
gcgacattcccaaaggaaatccagagaatggcatcagacttcctggagaactacatcttc
ctggctgttggaagagttgggtcgagtactgaattgattgtccagagaattgaatttgtg
caggaggcagataaaagaagtcacctgatggaccttctacatgcacaaagagatacagga
aagcaaatgctcacgcttgtctttgtggaaaccaaaaggggtgctgattcattggaaagc
tggttgtgcatgaatgggtttccagctacttctatccatggagatagaaatcagcaggaa
agagaacatgctctgagatccttcaagagtgggcagactcctatcttggttgctacagat
gtggcagctcggggccttgacattcctcatgttgctcatgttgtcaactttgatctcccc
aatgatattgacgactacgtacacaggattggaagaactgggagagcaggaaagagtggc
cttgcaactgccttcttcaacgataataactcatcaatggctagatctcttgctgaacta
atgcaagaatctaaccaggaagtacctgcatggctctcacgctatgcagctcgcccatct
tatggtggtgggggaaggaacagacggtctggaggtgggaaccgcttcggtggccgtgac
ttccgcaatgactcttcctcattcggcaaggggagttctcgtggaggtggcgactactat
ggtggaggcagcagtggtggttatggtggttcctcttcatatggtggtggtggatatggt
ggagctggggctcctagtgcttgggattga
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