Panicum virgatum (switchgrass): 120685346
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Entry
120685346 CDS
T07260
Name
(RefSeq) nuclear pore complex protein NUP107-like isoform X1
KO
K14301
nuclear pore complex protein Nup107
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120685346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120685346
03036 Chromosome and associated proteins [BR:
pvir03036
]
120685346
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120685346
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120685346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup84_Nup100
Motif
Other DBs
NCBI-GeneID:
120685346
NCBI-ProteinID:
XP_039823133
LinkDB
All DBs
Position
8N:complement(46741348..46750881)
Genome browser
AA seq
1109 aa
AA seq
DB search
MEVDPSPSPPSSRPPPLPGYFDPESSGRREEYRRYRKRMSSSNVSPLLGSSLSKSSEARL
LYDGGSIPRRPNAGLLLEDIKQEAQDYSNLEGLDGSRMFSSAKRRASLDGGSASDAAYSS
GRQAARQTLKPVKMEDDMYVPHEGETSFTMFASLLDSAIQGLMPFPDVILQFERTCRNAS
DSIRSAATGKLRVVEDKLMQQKAQLLLDEAASWSLLWCLYGKGNEDLSEELFVPPTTSHQ
EACRFVAVDLTAQLCLRIVLWLEGLASEALDLEKKVRGSHVGSYLPSSGVWHRTQRYLKR
NNNDSTIVKHVDFDAPTREGAQLLPDDKKQDELLLEDIWTLLRAGRLEEASELCRSAGQA
WRAATLCPFGGIDMFPSLDALLRNGKSRTLQAIELESGIGRQWRLWKWASYCASEKIAEQ
DGGCYEMAVYALQCSNLKRVLPICMDWESACWAMARSWLDVQVDLVLSQYQTSRPDGRQL
DDDMNGAQNSVGPESWPYHVLDQQPRNITALLQNLHSSDFVHENVSRACREQHRQIEVIF
ISKDGNYLCSCASCIMNLMSGDIAHLLDLLWSWLSPAEEDQNTARPLDDPEMIRFGAHVV
LVLRYIFSDEIEDELEEKLVTVGDLIINLYVRYLFSEDQEELVGVYASQLQRDLCINLFV
EMMELRLNSSLHTMYKLFLSAVEYLPFSSGDASKASFEEIIERVLSRSRQTKPSKYDEDF
SDVAHQHHLQSLQKAMVIQWLCFTPPPSIPDFQMITGKLLIRALMHSNTLFREFSLISMR
RVPELPAGPHKLLAILAEPLKQKENLISPEDQEVSDNLQEFEDWHEYYSLDATYRNWLKV
EMQNAAVSPDMLSAEENDQAVAAAKETLELAFLLLKKDERPWLDAVESSPFEPSQPIFLE
LHACAMLCLPSGECMLPDATSCTALTSALYSTANEEDVLHRQLKVDVQVSSRDPCCIEVA
LRCLAAEGDGYGLHEASDGGLLAAIMAAGFKGELSRFQPGVSMAISRLDAWYSDGNGSVE
STAAYIIRGLCRRCCLPETILRSMQACISLSAAGNSLDDCDKLIELVGSSESGMLHLFSQ
QQLQEFLIFERECLISKMELEEEQLSSDS
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggacccctcgccgtcgccgccctcgtcccgcccgccgcccctgccgggctac
ttcgacccagagtcctccggtcgccgcgaggagtaccgccgctacagaaagaggatgtct
tcttcaaatgtctcgccgctgctggggagctcactctccaaatcctctgaagcaaggctg
ttatatgatggaggcagcatcccgaggcggcctaatgctggtttactccttgaagacatc
aagcaggaggctcaggattattccaaccttgaaggcttggatggatcgagaatgttcagt
tcagccaaaagacgggcatcgctagatggtggttctgcctcagacgcagcttacagttcg
gggaggcaggcggcgaggcagacgcttaaaccagtcaagatggaagatgatatgtatgtg
ccacatgaaggagaaacatcttttacaatgtttgcatctctccttgattctgcgatccaa
ggtttgatgccctttccagatgtaattctacagttcgagaggacgtgtcgaaatgcttcc
gactcgatcagatccgctgccactggaaagcttcgggtggtggaagataaacttatgcag
caaaaggcacaacttttactggatgaagctgcttcctggtcacttctttggtgcctctat
ggcaaaggaaatgaggatctttctgaagagctttttgtgccaccaactacatcccatcag
gaggcttgccgctttgttgcagtagatcttacagcgcaactgtgtctgcggatcgtactt
tggcttgaaggtcttgcttctgaagctcttgatttggagaagaaggtgagagggtctcat
gttggttcatatctaccaagttctggtgtttggcaccgtacacagaggtacctcaaaaga
aacaataatgattctactatagtgaagcatgtggactttgatgctccaactcgtgaagga
gcccaacttcttcctgatgataagaagcaagatgaattgcttctagaagatatatggact
cttttaagagcaggaagattagaagaggcatctgagttgtgccgttctgctggccaggca
tggagagctgccactctttgtccttttggtggcattgatatgtttccatccctggatgca
ttgctcaggaatggaaagtccagaacactacaagccattgagttggaaagtggcattgga
cggcagtggcgtctttggaaatgggcatcatattgtgcttcagagaaaattgctgagcaa
gatggtggctgttatgagatggctgtatacgctttacagtgcagtaatttaaagcgtgtg
ttgccaatctgtatggactgggagtcagcttgttgggcaatggctagatcctggctggat
gttcaagtggatctagtattatctcagtaccaaaccagtagaccagatggaagacagctc
gatgatgatatgaatggagcccaaaattcagttggtccagaaagttggccataccatgtt
cttgatcaacaacctcgtaatatcactgctcttctgcagaacctccactcaagtgacttt
gttcatgaaaatgtgtctcgagcatgccgggagcagcatcgacaaattgaggtaatattt
atttccaaggatggaaactacctatgctcttgtgcatcatgcattatgaatctcatgagt
ggagatatagctcatcttcttgaccttctatggtcatggttgtcccctgctgaagaggac
caaaatactgcaaggccccttgatgacccagagatgatacgtttcggggcacatgttgtt
cttgttctgagatacattttcagtgatgaaattgaagacgagttggaggaaaagctggtt
actgtcggtgatctcatcatcaacttgtatgtgaggtatttgttctcagaggatcaagag
gagttggttggagtatacgcttctcagcttcaacgtgatctttgcattaatttgttcgtg
gaaatgatggaattaaggttaaatagcagtttgcatactatgtacaagctcttcctctct
gctgtggagtatctgccattctcatctggagatgcatccaaagctagcttcgaagagatc
attgagagggtgctttccagatctcgacaaacaaaacccagcaagtatgatgaggatttc
tctgatgttgcacatcaacatcacttgcagtcacttcaaaaggcaatggttattcagtgg
ctttgcttcacaccaccaccctcgattccagactttcaaatgatcactgggaagcttctg
attcgggcattgatgcatagcaatacactattcagagagttttccctgatatcaatgagg
agagtccctgaactcccagcagggccgcacaagttgcttgccatcctagctgaaccatta
aagcaaaaggaaaatttgatttctccggaagatcaggaggtatctgataacctacaggag
tttgaagattggcatgaatattactcccttgacgcgacttatcggaactggcttaaagtt
gagatgcagaatgctgctgtttctcctgacatgctttcagcagaggaaaatgatcaagct
gttgctgcagcaaaagaaacactggaattggcattcttgttattaaagaaggatgaaaga
ccatggttggatgctgtcgagagcagtccatttgaaccctcacagcctattttccttgag
ttgcatgcatgtgcaatgctctgcctaccttctggagaatgcatgttgccagatgcaaca
tcatgcacagctttgactagcgcactatattcaactgccaatgaagaagatgtgctgcat
cgccagttgaaggtagacgtgcaggtctcatctagagacccttgctgtattgaagttgct
cttcgctgcctagcagcagaaggtgatggatatgggcttcatgaagccagtgatggaggc
cttcttgctgcaatcatggcagctggctttaaaggtgaactcagtcgatttcaacctgga
gtttcgatggcaatttcacggcttgatgcttggtactctgatgggaatggctctgtggaa
agcactgctgcatacataattcgagggctgtgtcgaagatgttgcctacctgaaacgatt
ctccgatccatgcaggcatgtatctcactctccgccgcaggtaattctctagatgattgt
gataaacttattgagttggttggttcgtccgaatctggaatgctgcatttgttcagccag
caacagttacaggaattcctgattttcgagagggaatgcttgatatctaaaatggagctt
gaggaggagcagttatcttctgatagctaa
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