KEGG   Panicum virgatum (switchgrass): 120685373
Entry
120685373         CDS       T07260                                 
Name
(RefSeq) RNA-binding protein P-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120685373
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120685373
   03041 Spliceosome [BR:pvir03041]
    120685373
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     120685373
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120685373
Spliceosome [BR:pvir03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    120685373
SSDB
Motif
Pfam: RRM_1 RRM_7
Other DBs
NCBI-GeneID: 120685373
NCBI-ProteinID: XP_039823172
LinkDB
Position
8N:complement(43540352..43542080)
AA seq 416 aa
MGKRKRKKGRATTGTRENPDLAPHSQPTTSTPERKRRQPRDPAPGAGSDSEPDPSPPSSP
GSVRRLIEPYSRPRLLAILAQAAAADPALRARLGAAADASPSHRRLFVHGLPPRADPATL
AEAFSRFGPLADCHAVADRATGRCRGYGFVSFASRAAARRALRNAPRVVVAGCPVSAQFA
SAGPGPSGGGAGRRVYVTNVAPDASAERLRAFFARFGELDGGPFGFDADTGSSRGYALFV
YRAAAGAAKAVEEPYRVFEGRTLRCQLANEPARKAKAPPAPPPPAPALQPVLDAIAATGV
GDLAKYARDPVQAAVLLGQNPALAAAALSSALAAAAAASWNPAAPAAAPSPAAASAPMPV
AVATGRLAVAAAVEPLPVKFGVGSSGGAGLLGPYMPPLSPVVSSSPGRKGAMLGQS
NT seq 1251 nt   +upstreamnt  +downstreamnt
atggggaagaggaagaggaagaagggcagagccaccacgggaacccgcgagaaccccgac
ctcgccccacattcccagcccaccacctccacgcccgagcgcaagcgccggcaaccgcga
gatcccgccccgggcgccggctccgactccgagccggacccctcgccaccgtcctcgccg
ggctccgtgcggcgcctgatcgagccctactcgagaccccgcctcctcgccatcctggcg
caggcggccgcggccgaccccgcgctgcgcgcccgcctcggcgccgccgccgacgcgtcg
ccctcccaccgccggctcttcgtccacggcctgcccccgcgcgccgaccccgccacgctc
gcggaggcgttctcccgcttcgggccactcgccgactgccacgccgtcgcggaccgcgcc
acgggccggtgccgagggtacggcttcgtgtccttcgcctcccgcgccgccgcccgccgc
gcgctccggaacgccccgcgcgtcgtcgtcgctggctgccccgtctccgcccagttcgcc
tcggccggccccggcccgtccggcggcggcgccgggcggcgggtgtacgtgaccaacgtc
gcgccggacgccagcgcggagcggctgcgcgcgttcttcgcgcggttcggggagctcgac
ggcgggccgttcgggttcgacgccgacaccgggagctcccgcgggtacgcgctgttcgtg
taccgggcggcggccggcgccgccaaggcggtggaggagccgtaccgcgtgttcgagggg
cgcacgctgcgctgccagctcgccaatgagcccgcgcggaaggccaaggcacccccggcg
ccgccaccgccggcgccggcgctgcagccggtgcttgatgccatcgcggccaccggcgtg
ggggaccttgcgaagtacgcgcgggacccggtgcaggctgccgtattgctcgggcagaac
ccggctcttgcagctgcggcactgagctcggcattggcggctgcagcggcagcttcatgg
aatccagcggcacctgctgccgccccaagtccggctgctgcttctgcaccgatgccagta
gctgtggccacaggaagactggcagtggcagcggcagtagagccattgccggtgaaattt
ggtgttgggtcaagtggcggcgcagggctgcttgggccatacatgccgccattgtcgcca
gtggtgtcatcatccccggggaggaagggggcaatgctgggacagtcatga

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