Panicum virgatum (switchgrass): 120685406
Help
Entry
120685406 CDS
T07260
Name
(RefSeq) probable alpha-mannosidase At5g13980 isoform X1
KO
K01191
alpha-mannosidase [EC:
3.2.1.24
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00511
Other glycan degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00511 Other glycan degradation
120685406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120685406
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.24 alpha-mannosidase
120685406
Membrane trafficking [BR:
pvir04131
]
Autophagy
Cytoplasm to vacuolar targeting (CVT) pathway
Selective cargos
120685406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_38N
Glyco_hydro_38C
Alpha-mann_mid
Laman-like_dom
Glyco_hydro38C2
Thionin
Motif
Other DBs
NCBI-GeneID:
120685406
NCBI-ProteinID:
XP_039823244
LinkDB
All DBs
Position
8N:36792319..36801425
Genome browser
AA seq
1016 aa
AA seq
DB search
MGPVRLALLAVVALAAAGEAVYIPYNTSAGVVAGKLNVHVVPHTHDDVGWLKTVDQYYVG
SNNSIQGACVQNVLDSLIPALLKDENRKFIYVEQAFFQRWWRNQNDMIKDTVKELISSGR
LELINGGMCMHDEATVHYIDMIDQTTLGHKFIKEEFGQIPRIGWQIDPFGHSAVQAYLLG
AEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKSFGSSADIFAGIFPQNYEPPPGDFY
FEVDDDSPVVQDDPLLFDYNVEERVNGFVAAALAQANITRTNHIMFTMGTDFKYQYAESW
FRNMDKLIHYVNKDGRINALYSTPSIYTDAKYAANEQWPLKTNDFFPYADNPNAYWTGYF
TSRSALKRYVRMMSGYYLAARQLEFFKGKSKLGPTTDYLGDALALAQHHDAVTGTEKQHV
ANDYAKRLSIGYTRAQELVSTSLACLTELGSKPHCSSPTTKFSQCLLLNVTYCPPSEMDF
SKGKSLVVLVYNSLGWKRQDVLRVPVFSDSIVVHDSEGREVESQLLPIASASLNIRDKHV
KAYLGTSPGVTPKFWLAFPVSVPPLGFNTYFVSSMKKSASVSSKSTVYSSQGSEYSSLQV
GQGNLKLQYNAAGAFSLYSDSKTLIEANFEQKYKYYIGQDGNGSDPQASGAYIFRPNGTV
PIKTDSQVPLTVLRGPIVDEVHQQINSWIYQITRVYKGKDYVETEFIVGPIPTDDGNGKE
VATEIVTNMATNKTFYTDSSGRDFIKRIRDYRSEWKIEVHQPIAGNYYPVNLGIYVEDGN
KELSVLVDRSIGGSSINDGQIELMLHRRLLHDDGRGVAEALNETVCLGNQCEGLIIEGKY
YLKIDPQGEGSRWRRTFGQEIYSPLLLAFSEQDGGNWANSHTPKFSAMDPTYSLPDNVAL
LTLQELEDGSVLLRFAHLYEAGEHKDLSALASVDLKRVFPDKKIGKIVETSLSANQERAA
MEKKRLKWKVQGPPADEKVIRGGPVDPSKLVIELGPMEIRTFIVSFERSISGKQLL
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgggccccgtccgactcgccctcctcgccgtcgtcgcgctagccgccgcgggcgaggct
gtgtacatcccctacaacacgtcggcgggggtggtggccgggaagctcaacgtgcacgtg
gtgccgcacacccacgacgacgtcgggtggctcaagaccgtcgaccagtactacgtcgga
tccaacaactccatccagggggcatgtgtgcagaacgttctggattcgctcatcccggcg
ctgctcaaggacgagaaccgcaagttcatctatgtcgagcaggcattcttccagagatgg
tggaggaaccagaacgacatgatcaaggataccgtgaaggagctcatcagctctggacgg
ttggaattgatcaatggtggcatgtgcatgcacgatgaggccactgtgcactacatcgac
atgattgatcagactacgctcgggcacaaattcatcaaggaggagtttggtcagattcca
cggattggctggcagattgatccatttggccactctgcggttcaggcataccttcttggt
gcagaagtaggatttgatgctttctatttcttccggattgattaccaagatcgtgatact
cgaaagggaacgaaagaacttgaggttgtatggaggggctccaagagctttggctcatca
gctgatatctttgctggcatctttccacaaaactatgaaccgcctcctggtgatttttat
tttgaagttgatgatgattcccctgttgtccaggatgatccccttctttttgattataat
gttgaagaacgagtaaatggttttgttgctgcagctctagcacaggcaaatatcacgagg
acaaaccatatcatgtttacaatgggaacagacttcaagtaccaatacgcagagagttgg
ttcagaaacatggacaaattaattcactatgtgaataaggatggccgtatcaatgctctt
tattccacaccttccatttatactgatgcaaaatatgctgcaaacgagcaatggcctctc
aagaccaatgatttcttcccatatgcagataaccctaatgcgtactggacaggttacttc
acaagtagatctgccttaaagcgatatgtcaggatgatgagtggatactacctggcagcc
cggcagctggagttctttaaaggaaaaagcaaattaggtccaacaacagattatctaggt
gatgctctagctcttgctcagcatcatgatgctgttacaggaacagagaagcaacatgtg
gcaaatgattatgccaagagattgtcaattggatatacacgagcccaggagcttgtttcg
acttctcttgcttgtttaactgagttgggctccaaaccacattgttcttctccaacaaca
aaattttcacaatgtcttctcctaaacgttacctattgccctccttccgagatggacttt
tctaagggaaaaagtttggttgttcttgtgtacaactcacttggctggaaacgacaagat
gttcttcgtgtgccagttttcagtgattcaattgtggttcatgattctgaaggaagagaa
gttgaatcacaacttctgcctatagctagtgcctcactaaacatacgggacaaacatgtt
aaggcttacctaggcacttcaccaggtgtaacgcccaagttttggcttgcttttcctgtg
tcagtaccgcctcttggtttcaacacttattttgtctcaagcatgaagaaatcagcatct
gtttcttccaagtccactgtatactcatctcaaggaagtgaatatagtagtctacaagtt
gggcaagggaacttgaaacttcagtataatgcagctggagcattctctctgtactccgat
agcaagactctgattgaagcaaatttcgagcagaaatacaaatattacatagggcaggat
ggtaacggaagtgaccctcaggcttctggagcgtacatatttcggcctaatggcactgtt
cctatcaagactgacagtcaggttcctctcacagttctgcgtggccccatagtggatgaa
gtgcaccagcagattaattcatggatatatcagattaccagagtttacaaggggaaggac
tatgtggaaactgaatttattgttgggcctattccaacagatgatggaaatggaaaagaa
gtagcaactgaaattgtcacaaacatggcgacaaacaaaacattttacactgattccagt
ggacgtgatttcatcaaaaggataagggattatcgatcagagtggaagattgaagtgcac
cagcccattgctggaaactattatcctgttaatcttggcatttatgtggaagatggcaac
aaagagttgtctgtactggtagacaggtcaattggaggttcaagtataaacgatggacaa
attgagctaatgctacacaggaggctacttcatgatgatgggcgaggcgttgcagaggca
ctaaatgaaactgtctgtcttggaaatcaatgtgaaggactaattatcgaaggaaagtac
tatctcaaaattgatccacaaggagaaggatctaggtggcgtcggacatttggccaggaa
atatactcacctctccttcttgctttctcagagcaggatggaggcaactgggcaaattca
catactccaaaattctctgcgatggatccaacctacagcttgcctgataatgttgcattg
cttacccttcaggaactcgaagatggaagtgttcttcttcggtttgctcatctatacgag
gctggagagcacaaggatctttcagctctggcgagtgtcgacctcaagagagtattccca
gacaagaagattggcaagatcgttgagacaagcctatctgcaaaccaagaacgtgcagcc
atggagaagaagcgcctgaaatggaaggtgcaagggcctccagctgacgagaaggtgatc
cgtggagggcccgtggatccttcaaaacttgttatcgagctggggccaatggagatccgc
acgttcattgtcagcttcgagcgtagcatcagtggcaaacagctgctctga
DBGET
integrated database retrieval system
