Panicum virgatum (switchgrass): 120685427
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Entry
120685427 CDS
T07260
Name
(RefSeq) transcription initiation factor IIB-like
KO
K03124
transcription initiation factor TFIIB
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120685427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120685427
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
120685427
Prokaryotic type
Archaeal type
TFB
120685427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Ribosomal_S27e
Zn_ribbon_3
WHD_GDS1
DUF7573
RB_B
Zn_ribbon_LysW
Motif
Other DBs
NCBI-GeneID:
120685427
NCBI-ProteinID:
XP_039823290
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All DBs
Position
2K:53665670..53668982
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AA seq
312 aa
AA seq
DB search
MSDSFCPDCKKQTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG
GPTNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG
LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK
KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEEL
DIRRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTY
AKEEDLKNLCTP
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgagcgactccttctgcccggactgcaagaagcagacggaggtggcgttcgaccactcc
gcgggggacaccgtgtgcaccgagtgcggcctcgtcctcgaggcgcactccgtcgacgag
acctccgagtggcgcaccttcgccaacgagtccaacgacaacgaccccgtccgtgtcggc
gggcccaccaacccgctcctcaccgacggcggcctctccaccgtcatcgccaagcccaac
ggcgcgcagggcgacttcctctcctcgtcgctcggcaggtggcagaaccgcggctccaac
cccgaccgatccctcatcctcgccttccgcaccatcgccaacatggccgacaggttgggt
cttgtggctactattaaggaccgagccaatgaaatctacaagaaggttgaagatctcaag
tctatcaggggaagaaatcaagatgctatactagctgcttgtctgtatattgcttgtaga
caagaagataggcctagaactgtgaaagaaatatgttcagttgctaatggagcaacgaag
aaagaaattggcagagcaaaagaatttatagtgaaacagctggaagttgagatggggcaa
tctatggagatgggaaccattcatgctggagattttctgaggcgtttctgttcaactctt
gggatgaacaatcaagctgttaaagcagcccaggaggcagttcaacgctcagaggagctt
gatataaggaggagccctatctcaattgcagcagcggtaatttatatgataacccaactc
tcagaggacaaaaaaccacttaaagatatttccttggctactggtgtggcagaaggcacc
atcagaaattcatacaaggatctgtatccctatgcttcaagacttatccctaacacttac
gccaaggaggaagacctaaagaatctctgcacaccttag
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