Panicum virgatum (switchgrass): 120685503
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Entry
120685503 CDS
T07260
Name
(RefSeq) hydroxymethylglutaryl-CoA lyase, mitochondrial-like isoform X1
KO
K01640
hydroxymethylglutaryl-CoA lyase [EC:
4.1.3.4
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00280
Valine, leucine and isoleucine degradation
pvir00650
Butanoate metabolism
pvir01100
Metabolic pathways
pvir04146
Peroxisome
Module
pvir_M00036
Leucine degradation, leucine => acetoacetate + acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
120685503
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
120685503
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120685503
Enzymes [BR:
pvir01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.4 hydroxymethylglutaryl-CoA lyase
120685503
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Motif
Pfam:
HMGL-like
Sha_B_N
Git3
Motif
Other DBs
NCBI-GeneID:
120685503
NCBI-ProteinID:
XP_039823403
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Position
8N:1396838..1399766
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AA seq
427 aa
AA seq
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MSSLEEPLGLGDLPKLSISRLGSFSQPSAYRRAAADDRNTREYNNSCNGGAPMVFHADSH
AWHQQCRQADSSVELRDLPRKLMWDLPSFVKIVEVGPRDGLQNEKGNVPTSVKIQLIHKL
VAAGLSVVEATSFVSPKWVPQLADAKEVLKGIQQMPNVRYPVLTPNLRGFEAAVAAGAKE
IAVFASASESFSKSNINCTIDESLVRYRDVTAAAKKHGLLIRGYVSCVIGCPVEGAIDPS
KVAYVAKELYNMGCSEISLGDTIGVGTPGTECSCQCLPFALSFFYWYVETDPGSNSLRHP
CSFFLVVLSVSGSVVAMLEAVMSFVPADKIAVHFHDTYGQALANILVSLQMGISIVDSSV
SGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMEAGEYISKHLGRPLGSKTAA
ALRKLTT
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcctcgaggagccgcttggtcttggagacctgccgaagttgagtattagcaga
cttggaagcttctcccagccaagtgcttatcgtagggcagcggctgatgaccgcaacact
cgcgagtacaacaactcctgcaatggtggcgctccgatggtcttccatgccgattcccat
gcatggcatcagcaatgccgtcaggccgattcgtcagtggagcttagagatctccctcgg
aagcttatgtgggatctaccaagctttgtgaagattgttgaagttggaccccgagacggc
ctgcaaaacgaaaagggcaatgtaccaacatctgtaaagatacaactgatacacaaatta
gtggctgcaggtctatcagtagttgaagccacaagttttgtatccccaaaatgggtgccg
cagctagctgatgcaaaggaagtcctcaaaggaatccagcagatgccaaatgtgcggtac
cctgtgttaactcctaacctcagaggatttgaggctgctgttgcagctggtgcaaaggaa
attgcggtttttgcgtctgcctctgaatccttctctaagtcgaacattaactgtaccatt
gacgaaagccttgttcggtaccgtgatgttactgctgctgccaagaaacatggactcctt
atccgtgggtatgtttcgtgtgtgattggttgccctgttgaaggtgcaatcgatccatca
aaggtggcatatgtagcgaaggagctttataacatgggctgctcagagatttcacttggc
gatacaattggtgttggtacaccaggtactgaatgttcttgccaatgcttaccctttgct
ctcagttttttttattggtatgttgaaactgatccaggcagcaactcattgagacatccc
tgttccttcttccttgttgtgttgtctgtttcaggtagtgtagttgctatgcttgaagct
gtcatgtccttcgttccagcggacaagattgccgttcatttccatgatacatacggccag
gcccttgccaatatcctagtatcccttcaaatggggatcagcatagtagactcctcagtt
tcaggcctcggaggctgcccctatgcaaagggcgccaccggcaatgtcgccactgaggat
gtcgtgtacatgctgcatggcctggggatagagaccaacgtcgacctcaacaagctcatg
gaggctggcgagtacatctccaagcatctaggaaggccactgggctccaagactgctgcc
gctctgcgcaagctaaccacctga
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