Panicum virgatum (switchgrass): 120685544
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Entry
120685544 CDS
T07260
Name
(RefSeq) transcription factor VIP1-like
KO
K20557
transcription factor VIP1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
120685544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120685544
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Basic leucine zipper (bZIP)
Plant bZIP factors
120685544
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Gene cluster
GFIT
Motif
Pfam:
bZIP_1
bZIP_2
ATG16
ADIP
NET2A
bZIP_Maf
GIT_CC
SKA1
KASH_CCD
UPF0242
CENP-H
YabA
SecD-TM1
Cnn_1N
Motif
Other DBs
NCBI-GeneID:
120685544
NCBI-ProteinID:
XP_039823467
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Position
8N:3102698..3120507
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AA seq
323 aa
AA seq
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MDALLPPPAPSSAAFGGGGGVPARGHHRRAHSETFIRLPDADLLLDPDSDFGFSDIDFPS
LSDDSPAASDPTPRPQPQQPTPPAPPPPRPPSGAHMRSLSLDAAFFDGLSLQGGGGVAGH
KRSGSMDGATSPFEGESAPPGVLPDYAKKAVPAEKLAELALLDPKRAKRILANRQSAARS
KERKIKYTSELERKVQTLQTEATTLSAQLTLLQRDTSGLTTENRELKLRLQAMEEQAKLR
DALNDALREEVQRLKIAAGQVPNMNGNPFNGGLPQQQQQQQMASYFSQPQQMQYFGGHQG
QHHHRRNSSNGGGQSLSDSMDFM
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgttacttccccctccggcgccgtcctccgccgcgttcggcggcgggggcggg
gtccccgcgcgcgggcaccaccggcgcgcccactccgagaccttcatccgcctccccgac
gcggacctcctgctggacccggactccgacttcggcttctccgacatcgacttcccctcg
ctctccgacgactcccccgccgcgtccgacccgacgccgcggccccagccccagcagccc
acgccccccgcgccgccgccgccgcggccgccgagcggggcgcacatgaggagcctctcc
ctcgacgccgccttcttcgacggcctctcgctgcagggaggagggggcgtggcggggcac
aagcggagcggctccatggacggggccacctcgccgttcgagggcgagtccgcgccgccg
ggcgtgctcccggactacgccaagaaggccgtgcccgccgagaagctcgccgagctcgcg
ctcctcgaccccaagcgcgccaagaggatcctggcgaaccggcagtcggcggcgaggtcc
aaggagaggaagatcaagtacaccagtgagctcgagaggaaggtgcagacgctgcagacg
gaggccaccacgctctcagcacagctcacgcttcttcagagggatacctctggtttaacc
actgagaacagggagctcaaactccggttacaggccatggaagaacaagctaaacttcga
gatgctctgaatgatgccctgagagaagaagtccagcggcttaagatagccgctgggcaa
gtccctaacatgaacgggaaccccttcaacggaggactaccacagcagcagcagcagcag
cagatggcgtcctatttctcacaaccgcagcagatgcaatatttcggtggccaccagggc
cagcatcaccatcgccggaactcttcaaacggtggtggccagtccctgagcgactcgatg
gatttcatgtga
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