KEGG   Panicum virgatum (switchgrass): 120685632
Entry
120685632         CDS       T07260                                 
Name
(RefSeq) SKP1-like protein 1A
  KO
K03094  S-phase kinase-associated protein 1
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03083  Polycomb repressive complex
pvir04120  Ubiquitin mediated proteolysis
pvir04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120685632
   04120 Ubiquitin mediated proteolysis
    120685632
  09126 Chromosome
   03083 Polycomb repressive complex
    120685632
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120685632
   04121 Ubiquitin system [BR:pvir04121]
    120685632
   03036 Chromosome and associated proteins [BR:pvir03036]
    120685632
Membrane trafficking [BR:pvir04131]
 Endosome - Lysosome transport
  Acidification regulators
   RAVE complex
    120685632
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Adaptor protein
     120685632
   Cul7 complex
     120685632
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     120685632
  Centromeric chromatin formation proteins
   Kinetochore proteins
    CBF3 complex
     120685632
SSDB
Motif
Pfam: Skp1 Skp1_POZ YHR052C-B
Other DBs
NCBI-GeneID: 120685632
NCBI-ProteinID: XP_039823618
LinkDB
Position
2K:complement(53932689..53934783)
AA seq 171 aa
MASDAAAGKDKTLTLISCDKENFVVDESVAKESRTILHMIEDGCTDNGIPVPNVNAKILA
KVIEYCKKHVAARRGADADAAEPTAATNKADDDLKAFDADFVNVDQSTLFELILAANYLD
IKGLLDLTCQTVADMIKGKTPEDIRKTFNIKNDFTPEEEEEVRRENQWAFE
NT seq 516 nt   +upstreamnt  +downstreamnt
atggcgtcggacgcagcggcggggaaggacaagacgctgacgctgatcagctgcgacaag
gagaacttcgtggtggatgagtcggtggcgaaggagtcgcggaccatcctgcacatgatc
gaggacggctgcaccgacaacggcatcccggtcccgaacgtcaacgccaagatcctcgcc
aaggtcatcgagtactgcaagaagcacgtcgcggcgcgccgcggcgccgacgcggacgcc
gccgagccgactgccgcgaccaacaaggccgacgacgacctcaaggccttcgatgctgac
ttcgtcaacgtggaccagtccaccctcttcgagctcatcctggctgcaaactacctggac
atcaaggggctgctggacctgacctgccagaccgtcgcggacatgatcaaggggaagact
ccggaggatatccgcaagaccttcaacatcaagaacgacttcacacctgaggaagaggag
gaagtgaggagggagaaccagtgggccttcgaatga

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