Panicum virgatum (switchgrass): 120685635
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Entry
120685635 CDS
T07260
Name
(RefSeq) prolycopene isomerase, chloroplastic-like
KO
K09835
prolycopene isomerase [EC:
5.2.1.13
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00906
Carotenoid biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
120685635
Enzymes [BR:
pvir01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.13 prolycopene isomerase
120685635
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Motif
Pfam:
Amino_oxidase
NAD_binding_8
DAO
FAD_oxidored
FAD_binding_2
HI0933_like
GIDA
Pyr_redox_2
FAD_binding_3
Thi4
GMC_oxred_N
Pyr_redox_3
Motif
Other DBs
NCBI-GeneID:
120685635
NCBI-ProteinID:
XP_039823617
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Position
8N:40135433..40147465
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AA seq
586 aa
AA seq
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MPPLAARVHAPPLLAPAARPAARLRASSGPRGGGGVRRGALASEKPVAVAVAEKAGEGGG
GGGWGEGPYDAIVVGSGIGGLVAATQLAAKGARVLVLEKYLIPGGSSGYYRRDGFTFDVG
SSVMFGFSDKGNLNLITQALEAVGRKMEVLPDPSTVHFHLPGDLSVLVHRKYEDFVNELI
SKFPHEKEGILKFYGICWKIFNSLNSLELKSLEEPLYLFGQFFQKPLECLTLAYYLPQNA
GDIARKFIKDQELLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGGINYPVGGVGGIA
TSLADGLVEKGSEIHYKANVTNVILENGKAVGVRLSNGKEFFAKTVISNATRWDTFGKLL
KDKELPEEEKNFQKNYVKAPSFLSIHTGVKASVLPAGTDCHHFVLEDDWNNLEKPYGSIF
LSIPTVLDPSLAPEGHHILHIFTTAGIEDWEGLSRKEYEEKKEAVANEIIRRLEKKLFPG
LQDSIVLKEVGSPKTHRRFLARNDGTYGPMPRSKPKGLLAMPFNTTSIDGLYCVGDSCFP
GQGVIAVAFSGVMCAHRVAADIGLEQRSPVLDAGLLGLLRWLRTLA
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgctcgccgcgcgggtccacgccccgcctctcctcgcccccgccgcccggccg
gccgcgcgcctccgggcctcgagcgggccccgcggcggcggcggcgtgaggaggggcgcg
ctggcttcggagaagccggtggcggtggcggtcgcggagaaggccggcgagggcggggga
ggaggcggatggggcgagggcccgtacgacgcgatcgtcgtcgggtcggggatcggcggg
ctggtggcggcgacgcagctggcggccaagggcgcgcgggtgctggtcctcgagaagtac
ctcatcccggggggaagctccgggtactaccgccgcgacgggttcaccttcgacgtcggc
tcctccgtcatgttcggcttctccgacaagggtaacttgaatttgatcacacaagcactg
gaagcagttgggcgtaagatggaagtcctacctgacccttctacggttcatttccaccta
cctggagatctttctgtccttgtgcatagaaagtatgaagacttcgtcaatgaacttatc
agcaaattccctcacgagaaggaagggatccttaagttctatggcatatgttggaagatc
ttcaattcattaaattcattggagctgaagtccctagaggagcccctttatctttttggg
caatttttccagaagcctctagaatgcttaactctagcttattatttgccgcagaatgct
ggggatattgctcgcaagttcataaaagatcaggagctactctccttcatagatgccgag
tgtttcattgtgagcacagtcaatgccttgcaaacacccatgataaatgcaagcatggtg
ttgtgcgataggcactttgggggaattaattatccagttggtggtgttggtggtattgcg
acatccctggcagatggccttgttgaaaagggtagtgaaatccattacaaggcgaatgta
accaatgttattcttgaaaatgggaaagctgttggtgtgaggctatcgaatgggaaggag
ttctttgctaaaacagtgatatcaaatgccacaagatgggacacctttggaaagctcttg
aaagacaaagagcttccagaagaggagaaaaacttccaaaagaattatgttaaggcacca
tcattcctttcaattcatacgggcgtcaaagcctcggttttgcctgctggcacggactgc
caccattttgtacttgaggatgattggaataacttggagaagccttatggaagcatattt
ctaagtatccctacagttcttgatccatcattagctcctgaaggacatcatatacttcat
atatttactactgcaggcatagaagattgggagggtctttcgaggaaggagtatgaagag
aaaaaggaggcagtggccaatgagattatcagaaggcttgaaaagaagttgtttcctggt
cttcaagattcaatagtcctcaaagaggtaggctcaccaaaaactcaccggagatttctt
gctcgaaacgatggtacatatggaccgatgccacgcagtaaaccaaagggcttgctggca
atgcctttcaacactacgtcaatagatggcctttactgtgttggtgacagctgttttcct
gggcaaggtgtcattgctgtagcattctcaggggtcatgtgtgctcaccgagtcgctgca
gatattgggctagagcaaagatctcccgttcttgatgctggtcttcttgggctactgaga
tggttgagaacacttgcatag
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