Panicum virgatum (switchgrass): 120685673
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Entry
120685673 CDS
T07260
Name
(RefSeq) WD-40 repeat-containing protein MSI3-like
KO
K10752
histone-binding protein RBBP4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
pvir03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120685673
03083 Polycomb repressive complex
120685673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120685673
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
120685673
Histone modification proteins
HAT complexes
HATB complex
120685673
HDAC complexes
Sin3A-HDAC complex
120685673
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
120685673
PRC2.2
120685673
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
120685673
Heterochromatin formation proteins
Other heterochromatin formation proteins
120685673
Chromatin remodeling factors
NuRD complex
120685673
NuRF complex
120685673
NuRF complex (fruit fly)
120685673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
CAF1C_H4-bd
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
EIF3I
WD40_RFWD3
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
WD_LRWD1
ANAPC4_WD40
Beta-prop_EML
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_WDR90_POC16_2nd
MIOS_WD40
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
120685673
NCBI-ProteinID:
XP_039823663
LinkDB
All DBs
Position
2K:53973587..53978132
Genome browser
AA seq
402 aa
AA seq
DB search
MDDGSSSPASPPSTAAPSAAEMEEYGNWKKNAAVLYDLVISHPLEWPSLTVQWLPSKSST
RGHRLVVGTHTSDQAPNSLMVLDAVLPLPPRLAAAAAASGGAVPAPSVSVSLAAPHRGEV
NRARCMPQRPFTVATKTCLDEVHVYHLGDGDGSEKSGADVVLRGHDAEGYGLAWSPMKEG
WLLSGSYDKKICLWDLASGSGAPVLDAHQVFEAHEDLVEDVAWHLKDDNIFGSVGDDCKL
MMWDLRTNKPEQSIAAHQKEVNSLSFNPFNEWILATASGDATVKLFDMRKLSRSLHTFDS
HEGEVFQVEWNPNLATVLASSAADKRVMIWDVNRIGDEQSEDADDGSPELLFVHGGHTAK
ISELSWNPSEKWVVASVGEDNILQIWEMAESIYSDDYSLQDN
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggatcctcctcgccggcgagccccccgtcgacggcagcgccgtccgcagcg
gagatggaggagtacgggaactggaagaagaacgcagcggtgctctacgacctcgtcatc
tcccacccgctcgagtggccgtcgctcaccgtgcagtggctcccctccaagtcgtcgacc
cgcggccaccggctcgttgtgggcactcacacctccgaccaggcccccaacagcctcatg
gtcttggacgcggtgctcccgctcccgccccgcctcgcggcggccgccgctgcctcgggc
ggcgccgtcccggccccgtccgtgtccgtctccctcgcggcgccgcaccggggcgaggta
aaccgcgcgcgctgcatgccgcagcggccctttacggtggccaccaaaacgtgcctggat
gaggtccacgtgtaccatctcggcgacggcgacggcagcgagaaaagcggcgccgatgtt
gtgctacgggggcatgacgcggagggttatggtttggcctggagcccgatgaaggaggga
tggctgctgagcggctcgtatgataagaagatttgcctgtgggatcttgcctctgggagt
ggagctcctgttctggatgcccatcaggtgtttgaggctcatgaggatctcgttgaagat
gttgcctggcacctgaaagatgacaatatatttggatctgttggggatgactgcaagttg
atgatgtgggacctgcgtacaaacaaaccagaacaatctattgctgcacaccaaaaggag
gtcaactctttgtcattcaatccatttaatgaatggatcttggctacagcatctggagat
gcgacagttaagctatttgatatgcgaaaattatcgagaagcttgcacactttcgacagc
catgagggcgaggtgtttcaggttgaatggaacccgaatttggctactgtattagcttca
tctgccgcagacaaaagagtgatgatatgggatgtcaacaggattggagatgagcagtca
gaggacgctgatgacggatccccggagctgctgttcgtccatggaggccacacggccaag
atatcagagctgtcgtggaaccccagcgagaaatgggtcgttgccagcgtgggtgaagat
aacatcctgcagatctgggagatggcggagagcatctacagcgatgactactcgctgcag
gacaactga
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