Panicum virgatum (switchgrass): 120685699
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Entry
120685699 CDS
T07260
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-like isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120685699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120685699
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120685699
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
120685699
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
120685699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
RTT107_BRCT_5
TopBP1_BRCT0
NIBRIN_BRCT_II
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
120685699
NCBI-ProteinID:
XP_039823697
LinkDB
All DBs
Position
8N:complement(7248915..7258351)
Genome browser
AA seq
964 aa
AA seq
DB search
MTPSYSSGPAGPSGGRRAATFAGASVFLSRNLVAPEVFDAVHDALRLNGAEVLLCADPSR
TGPLEFHVISSSSHERFADLRTKGCNLLGPQCILSCAKERRFLPKQSYTCCLAMDGVKIL
CSGFEKAEKAKIEELVTAMGGILQSKSSMDVNFVIVKDVMAAKYKYAVNNLKPVVTVNWL
EQCWIEHRVVPHEPYRILPFVGLNICVTKLNPVERKKLERTIVQNGGQFSACLTRKCTHL
VANEPGGDKYVVARRWGNIHIVNPRWVEQSVARRACLDENSYLVCQTSSASSGLKTSLKE
QHNPEISSASASFQLVPTTSVDDSVSTSQYVPASSGDASKISNTDIVGAPGVQEANEMQV
DSHVAEDSEAENDDLYLSNCRISLVGFEENELLRLLMMVRNGGGSRHILLNEKLTHIILG
APSEDEKKEVRRLAAWGVINVVKVTWLEDCNKAKKEVKVSPTHMATELLLKEFSHVTMEK
SAGTCETKVAKSSCGIFHVPTVNDSHGKQLEKDMSSERKPARGKHENSMNKTRSATRSAN
SSQQNAVVNISKYDPKPQGASTVNSGNSRSDVFKGKTFGFSNSFSHDKRPEVINWIREGG
GVVVDDIQSTTVNYTIECHGRNSMPCDFSHSTAVSTHWIRSCLEVGCLQEVGSHPIFSPL
RCRIPLPGFEKFRFCISLSQYEEKESFLLKNLCCALGAKFTEKAFKGVTHLICKFASGDK
YKVYSKRGTPTITEEWLFECVKQDTIVPFDHFQPKPLTSQDKEADLCTVSQSSTQASRFN
CSELLSGYQVTTSNPTHNLAGDASANEEAIAPAVSKRRLLSVSGNANDICGNIGRTEKHL
ETGSVPDVADAIEVLSSKIQDVQSPKNIFEPDNSAVVQDQKDTHSFGISRSWLNMQQRQE
NVPGTKVQSSSPAPSPAPTTYYPFSETQTESQVVGYEEDLTGRQKIIDRVRSQSTNVTPL
TEIP
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgtcctacagctccggcccggcaggtccctccggcgggcggcgggcggcgact
ttcgccggcgcgagcgtgttcctgtcgcggaacctggtggcccccgaggtgttcgacgcc
gtgcacgacgcgctgcgcctcaatggcgccgaggtcctgctctgcgccgacccgagccgc
acgggccccttggaattccacgtcatctcatcctcctcccacgagaggttcgccgatctg
aggactaaaggctgcaatttgctaggaccgcagtgcattctttcctgtgctaaagaacga
cgttttctacctaaacagagttatacttgttgccttgcaatggatggggttaagatacta
tgttcaggctttgaaaaagctgagaaggctaagattgaagaattagtgacagccatggga
ggcattttacaaagtaagtcctccatggatgtgaactttgtaatcgtaaaggatgtcatg
gctgctaaatacaaatatgctgtgaataatttgaagcctgttgtcaccgttaactggtta
gaacaatgctggattgaacaccgtgttgtgcctcatgagccctacaggattcttcccttt
gttgggttgaatatctgtgtcaccaaactaaatccagttgaaaggaagaaactggagaga
acaatagtgcagaatggtggtcagttttcagcctgtcttacgcggaagtgcacccattta
gttgcaaatgaacctggaggtgacaaatatgtcgtggcccgaagatggggtaatatacac
attgtaaatccaagatgggttgaacaatccgttgctcgtagagcttgcctagatgaaaat
agctaccttgtttgtcagacttcgtctgcttctagtggtttaaaaacttcactcaaggaa
caacacaacccagagatcagtagtgcaagtgcaagttttcaacttgttccaacaacatca
gttgatgattcagtatcgacgtcacaatatgtgcctgcttcatctggtgatgcttcaaag
atcagcaacactgatattgttggtgcacctggtgtccaagaggcaaatgagatgcaggtt
gatagtcatgttgctgaggactcagaggcggaaaatgatgatctatatttatcaaactgc
agaatttctttggtgggctttgaagagaatgagctgttaaggctactcatgatggtacgc
aatggtggtggatcccggcatattctgttaaatgagaagcttacacatattatacttggg
gcgccatcggaggatgagaaaaaggaagtaagacgtctggctgcttggggtgtaataaat
gtagtgaaagtaacatggttagaagactgcaataaagcaaaaaaggaagtaaaagtatct
ccaactcatatggctactgagctactcttgaaagagttttcacatgtgactatggaaaaa
tctgctggtacatgtgaaacgaaggtagccaagagctcttgtgggatttttcatgtccca
actgttaatgactcacatggcaaacaacttgaaaaagatatgtcatctgaaagaaaacct
gctagaggcaaacatgaaaacagcatgaacaaaacccgatcagcaaccaggtctgcaaat
tcaagccaacaaaatgcagtggtcaatattagcaagtacgatcccaaacctcaaggagca
tccacagtgaattcaggaaatagcagatcagatgttttcaaagggaaaacattcggcttc
tcaaattcattttctcatgacaagagacctgaggttattaattggatcagagaaggcgga
ggcgttgtggtggatgatatacaatctacaactgtgaattacacaattgagtgccatgga
cgaaacagcatgccttgtgacttctctcattctacagctgtttcaactcattggatacgc
tcgtgtttggaggtgggttgcttacaagaagttggaagccatcctatcttctctccattg
cgctgtcgcatcccattaccaggatttgagaagttccgtttctgtatctcactttcacaa
tatgaagagaaagaaagctttctgctgaagaacttgtgctgcgctttaggcgctaaattt
acagaaaaggcattcaagggagtgacccatcttatctgcaaatttgcaagtggtgacaag
tataaggtttactccaaaagaggaactccaaccattactgaggagtggctctttgagtgt
gtaaaacaggatacaattgtcccttttgatcactttcagccaaaaccacttacttctcag
gacaaagaggctgatctgtgcactgtcagtcagtcttccacgcaggcaagcagatttaac
tgctctgagctgcttagtggatatcaagtaacaacaagtaatccaacacacaacttggca
ggtgatgcctcggctaatgaagaggcaattgctcctgcagttagtaaaagaaggttgcta
tctgtttctggcaatgctaatgatatatgcggaaacatcggaaggactgagaaacacctt
gaaactggctctgttcctgatgttgctgatgcgatagaggtcctatcgtccaagattcaa
gatgtgcaatctcctaagaatatatttgaacctgacaattctgctgttgttcaagaccag
aaagatacacactcctttggcatttcaaggagctggttgaatatgcaacagaggcaagag
aacgtacctggcaccaaggtccaaagctcctcccctgcaccctccccagcacccactact
tactaccctttcagtgagacgcagacagaatctcaggtcgtgggatacgaggaagatctg
accggcaggcaaaagatcattgatagagttcgctctcagagcactaatgtaactccattg
accgagattccttga
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