Panicum virgatum (switchgrass): 120685787
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Entry
120685787 CDS
T07260
Name
(RefSeq) serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform-like
KO
K11584
serine/threonine-protein phosphatase 2A regulatory subunit B'
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
pvir04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120685787
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120685787
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120685787
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120685787
03036 Chromosome and associated proteins [BR:
pvir03036
]
120685787
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
120685787
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
120685787
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
120685787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B56
Sec7-like_HUS
Motif
Other DBs
NCBI-GeneID:
120685787
NCBI-ProteinID:
XP_039823812
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Position
2K:complement(54165444..54168315)
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AA seq
463 aa
AA seq
DB search
MGAAAAEVVAPRPASASGKRRSTTLRFLFELEKPDGLLPGTAKLPPPSPEPEADSLIDKI
ASCHRVFTFAPGEREEERDAKRERLVEVLGQVRSAGGKQRALDHRVMVALLKMVAANLFR
AMPPSAYPPLPPDGVDEDAPAMVLAPSWPHLQVVYDILLSAVTATDGKALRNHVDRAFLS
GLLALFASEDPRERDRLKTVYHQLYSKLTGERAFMRRSMAAALLRLVYEAPAAERHCGVA
ELLEICGSIINGFAVPLKEEHRAFLARVLLPLHRTRWAHTYHRQLAYCVLQFVHKDPGLA
GAVVTGILRHWPVTNCQKEVLLIEELEEILEVIDPNQFQNLAVPVCSRIARCVSSCSSQV
AERALYVWNNERFLELATSSPGVMEKILPAFVASVEGNLERHWSKCVQQVTASVKALLEQ
VAPDLYARCAADLAARRSEAEAAAAVRDARWRKLELAAAGAFK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggcgctgccgcggcggaggtggtggcgccgaggccggcgtcggcgtcgggcaagcgg
cggtcgaccacgctgaggttcctgttcgagctcgagaagccggacgggctgctgcccggc
acggccaagctcccgccgccgtcgccggagcccgaggccgacagcctgatcgacaagatc
gcctcgtgccaccgggtgttcacgttcgcccccggcgagcgcgaggaggagcgggacgcg
aagcgggagcgcctcgtggaggtgctcggccaagtccggtcggcggggggcaagcagcgg
gcgctggaccaccgcgtgatggtggcgctgctcaagatggtcgccgccaacctgttccgg
gcaatgccgccgtcggcgtacccgccgctgccgcccgacggcgtggacgaggacgcgccg
gcgatggtgctggccccgtcgtggccgcacctccaggtggtgtacgacatcctcctctcc
gcggtcaccgccacggacggcaaggcgctgcgcaaccacgtcgaccgcgccttcctctcg
ggcctcctcgcgctgttcgcctccgaggacccccgcgagcgcgaccggctcaagaccgtg
taccaccagctctactccaagctcaccggcgagcgcgccttcatgcggcgctccatggcc
gccgcgctcctgcggctcgtctacgaggcgcccgccgccgagcgccactgcggcgtcgcc
gagctgctggagatctgcggcagcatcatcaacggcttcgccgtgccgctcaaggaggag
caccgggcgttcctggcgcgcgtgctgctgccgctgcaccggacgcgctgggcgcacacg
taccaccgccagctcgcctactgcgtgctccagttcgtgcacaaggacccggggctcgcc
ggcgccgtcgtcaccggcatcctgcgccactggcccgtcaccaactgccagaaggaggtg
ctgctcatcgaggagctcgaggagattctcgaggtcatcgaccccaaccagttccagaac
ctggccgtgcccgtctgctcgcggatcgcccgctgtgtcagtagctgcagctctcaggtg
gcggagcgggcgctgtacgtgtggaacaacgagcggttcctggagctggcgacgtcgtcg
ccgggcgtgatggagaagatcctgccggccttcgtggcgagcgtggagggcaacctggag
cggcactggagcaagtgcgtacagcaggtgacggccagcgtcaaggccctgctggagcag
gtggcgcccgacctgtacgcccggtgcgccgccgacctcgccgcgcggcggtccgaggcc
gaggccgccgccgccgtgcgcgacgcacggtggcggaagctcgagctggccgccgccggc
gccttcaagtag
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