Panicum virgatum (switchgrass): 120685900
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Entry
120685900 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase CHFR-like isoform X1
KO
K10644
E3 ubiquitin-protein ligase CHFR [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120685900
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120685900
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120685900
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
zf-CRD
zf-C3HC4
zf-RING_2
RING_XB3-XBAT31
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
TAP42
zf-CCHH
Motif
Other DBs
NCBI-GeneID:
120685900
NCBI-ProteinID:
XP_039823955
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All DBs
Position
8N:5827540..5839561
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AA seq
489 aa
AA seq
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MDAGECSTSQPPRPSSASGSSPASASASAAWAKLVPADPAYPEVEVAEDDAVVCSLVAPA
AGGEEVAWCEIRRDAGDASSASIRNLRYCAARRGLCSDAIIVDGKIVKQEPVDIKPGSEI
FSEPQKEGHLVYTFEITAAKDQDKNNVKIVLDIENAKCSICLNLWHDVVTVAPCLHNFCN
GCFSEWLRRSSSKSRDKSQSAACPQCRTAVQSVGRNHFLHNIEEAILQAFSSLQRSDEEI
ALLESYASVKSNIVLGKQKNQSRKRPFSRSSDEINNADLPCPQCRTEFGGFRCSPGAAHL
QCNGCGGMMPARSNVNIPQKCLGCDKAFCGSYWCSQGVDSSHCNLICSQETFKMISQRHI
SRLPDTVHGGNPYEKDITEKCIQQSGKTLQAVIAEWISKFDNMEIDRSRLQLNNVDAITS
RTYICNHCYNKFIDFLLYWYRVSMPRNLLPPDAVNRESCWYGFMCRTQHHRPDHAKKLNH
VCRPTRGNP
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggacgccggcgagtgctccacctcccagcccccgcgtccctcctccgcctccggctcc
tccccggcctccgcctccgcctccgcggcctgggccaagctagtgcccgccgaccccgcc
tacccggaggtggaggtggccgaggacgacgccgtggtctgctccctggtcgcgcccgcc
gccggcggggaggaggtcgcgtggtgcgagatcaggcgcgacgccggggacgcgtcgtcc
gcctcgatccggaacctcaggtactgcgccgcgcgccgtggactttgctcggatgcaatt
attgttgatgggaaaattgtgaaacaagaacctgttgatattaaacctgggagtgagatt
ttctctgaaccccagaaagaaggtcatttagtgtatacctttgaaattacagctgcaaag
gaccaggacaaaaataatgtgaagattgtactagatatcgagaatgcaaagtgcagcata
tgcttgaatttgtggcatgatgttgttactgttgctccctgcctccataacttctgcaat
ggatgtttctcagagtggttaagaaggtcttcatctaaatcgcgtgataaaagccagagc
gctgcatgcccccaatgtaggacggcagttcaatcagttggaaggaatcacttcctgcat
aatattgaagaggctatattacaagctttttcatcgctacagaggtctgatgaggagatt
gcattgctagagtcatatgcttcagtaaaatctaatattgttttggggaaacagaaaaat
caatcaagaaaacggcctttttcacgttcaagtgatgaaatcaacaatgcagatctgcca
tgtcctcaatgtcgtactgaatttggtggatttcgatgcagtccaggagctgcacacttg
caatgcaatggatgtggagggatgatgccagccagatctaacgtcaatataccacaaaaa
tgtttagggtgtgataaagcattttgtgggtcttattggtgttcacaaggagtggattca
agccattgtaatctaatctgcagccaggaaactttcaagatgatctctcagcgccatatc
tccagacttcctgacacagttcatgggggcaacccatatgaaaaagatattacagaaaaa
tgcatacaacagtcaggcaaaacattgcaagctgtaatcgctgagtggatatcaaaattt
gacaacatggaaattgatcgctcaaggttgcaattgaataatgtggatgcaatcacgtcc
aggacgtatatttgcaaccattgctacaacaagttcattgatttcctgctgtactggtac
cgcgtttcaatgccccgaaatcttcttccacctgatgctgtcaacagggagagctgctgg
tacggtttcatgtgccgcacccagcaccatcggcctgaccatgcgaagaagttgaaccat
gtctgccgccctacaagaggcaacccctag
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