Panicum virgatum (switchgrass): 120685901
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Entry
120685901 CDS
T07260
Name
(RefSeq) alpha-L-arabinofuranosidase 1-like
KO
K01209
alpha-L-arabinofuranosidase [EC:
3.2.1.55
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00520
Amino sugar and nucleotide sugar metabolism
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00520 Amino sugar and nucleotide sugar metabolism
120685901
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.55 non-reducing end alpha-L-arabinofuranosidase
120685901
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Gene cluster
GFIT
Motif
Pfam:
ASD1_dom
Alpha-L-AF_C
CBM_4_9
CBM_4_9_1
DUF5719
Motif
Other DBs
NCBI-GeneID:
120685901
NCBI-ProteinID:
XP_039823957
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Position
8N:1123286..1129883
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AA seq
667 aa
AA seq
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MGSIRDYKWKRMGTNEASPPTVLCLFFLFCLGCKCLASEFEATQTATLKVDASPQLARKI
PDTLFGIFFEEINHAGAGGIWAELVSNRGFEAGGPHTPSNIDPWSIIGDDSSIFVATDRT
SCFSRNIVSLRMEVLCDDCPAGGVGIYNPGFWGMNIEDGKTYNLVMYVKSPETTDLTVSL
TSADGSQNLASATVTVSGTSNWTKLEQKLVAKGTNRTSRLQITTNKKGVVWFDQVSLMPE
DTYKGHGFRTELISMLLDLKPRFLRFPGGCFVEGDWLRNAFRWRESIGPWEERPGHFGDV
WHYWTDDGLGYYEFLQLAEDLGAAPIWVFNNGVSHNDEVDTVAIAPFVKDVLDSLEFARG
SANSTWGSVRASMGHPEPFPVKYVAIGNEDCGKKFYRGNYLKFYNAIRQAYPDIQMISNC
DGSSKPLDHPADLYDFHVYTDSKTLFNMRSTFDRTSRSGPKAFVSEYAVWRSDAGRGSLL
ASLSEAAFLTGLEKNSDIVQMASYAPLFVNNNDQTWNPDAIVFNSWQHYGTPSYWMQTLF
RESSGAMIHPIKISSSYSSSLAASAITWQDSENSFLRVKVVNFGSDAVSLTISITGLQAS
VNALGSTTTVLTSGNVMDENSFSNPNKVVPVKSELSNATEQMQVPLAPRSFSAFDLALAQ
SKLVAEM
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgggttcgattagagattacaagtggaagcgtatgggtaccaacgaagcatcccctcct
actgttctctgcctcttctttctgttctgcttaggctgcaaatgcttagcgtcagaattc
gaagccacccagacagcaaccctcaaggttgatgcctcaccgcagcttgctcggaagatt
cctgatacactatttgggatcttttttgaggagatcaaccatgcaggagctggtggaata
tgggctgaactcgttagtaacagaggttttgaagctggaggccctcatactccatcaaac
atcgacccatggtccatcattggagatgactcttccatatttgtggcgactgatcgtaca
tcatgtttcagtcgaaacattgtttctctaaggatggaggtcctctgtgatgactgtcca
gctgggggtgttggcatttacaacccaggattctggggcatgaacatagaagatggaaag
acatacaacctagttatgtatgttaagtcaccagaaacaacagacttgactgtttcatta
acgagtgccgatgggtcgcaaaatctggcttcagctacggtcacagtttctggcacgtca
aattggacaaaactggagcagaagttggttgctaaaggaaccaatagaacctcaaggctt
caaataacgacgaacaagaaaggagttgtctggtttgatcaagtatcactcatgcctgaa
gacacatacaagggacatggttttcgcacggaacttatatccatgcttttggatttgaag
ccacgattcttgagatttcctggaggctgctttgtggaaggtgattggttaaggaatgcc
ttcaggtggagagaatctattggtccatgggaagagagacctggacacttcggggatgtt
tggcattactggactgatgatggccttggatattatgaatttcttcagcttgcggaggac
ctgggtgctgcgccaatctgggtgttcaacaatggagtcagccacaatgatgaagttgat
actgttgctattgctccttttgtaaaggatgtattggacagtctagagtttgcaaggggg
agtgcaaattcaacatggggctctgttagggcttcaatgggtcaccctgaacccttccca
gtgaaatatgttgcaattggaaatgaagactgtgggaaaaaattctaccgtggtaactac
ctcaagttctacaatgctataagacaggcctatcctgacattcaaatgatctcaaactgt
gatggttcatctaaaccactggatcatcctgctgatctatatgacttccatgtctacact
gactccaagactttgtttaacatgaggagcacatttgacagaacatctcgtagtggaccc
aaggcttttgtgagtgagtacgctgtttggagaagtgacgcaggtagaggaagtcttctt
gcttcgttgtcagaagctgctttccttactgggctggagaagaatagtgacattgttcag
atggcaagttacgctccattgttcgtgaacaacaatgatcaaacgtggaacccagatgct
atcgtctttaactcgtggcaacattatggaactcctagttactggatgcaaacccttttc
cgtgagtccagtggtgctatgattcatccaatcaaaatcagttccagctactctagttcg
ctggcagcatctgcaattacttggcaagattcagagaatagtttcctaagagtaaaggtt
gtcaactttggatctgatgctgttagccttacaatctccataactggacttcaggccagt
gttaatgctctgggatcaaccaccactgttctcacatccgggaatgttatggatgaaaat
tcgttcagtaacccaaacaaggttgtgccggtgaagagcgagctgagcaatgccacagag
cagatgcaggtcccgctggctcctcgctccttcagtgcattcgatctcgcgctggctcag
tccaagcttgttgcggagatgtga
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