KEGG   Panicum virgatum (switchgrass): 120685958
Entry
120685958         CDS       T07260                                 
Name
(RefSeq) WD repeat-containing protein VIP3-like
  KO
K12602  WD repeat-containing protein 61
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    120685958
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120685958
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     120685958
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_MABP1-WDR62_2nd EIF3I WDR55 WD40_Gbeta ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_Vps41 WDR90_beta-prop_4th eIF2A Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_NUP159_NUP214 Beta-prop_DCAF12 Beta-prop_IFT140_1st Ge1_WD40 Beta-prop_WDR41 Beta-prop_WDR35_TULP_N CFAP43_N Beta-prop_VPS8 Beta-prop_RIG_1st Beta-prop_WDR11_1st Beta-prop_ACSF4 WD40_like Beta-prop_pof12 Beta-prop_IFT80_2nd
Other DBs
NCBI-GeneID: 120685958
NCBI-ProteinID: XP_039824043
LinkDB
Position
8N:47676228..47679397
AA seq 322 aa
MKLAGLKSVDGAHEESIWAAAWAPAADHRPTAVLLTGALDETVRAWRPDDLAALGPPARG
HALGVVSLAAHPAGALAAAVSLDSFVRVFDVDSGASVATLEAPPSEVWGVQFHPKGNALA
AAGGGSGSVKLWDTEKWQPITSLAIPRPEGARPDKTGSGKLVLSVAWSPDGKLLACGSMD
GTIAVYDAIRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTACDDRHIHIYDAKEKALIGAM
SGHASWVLSIDVSPDGLAVATGSSDRTVRLWDINMRSSVQTMSNHSDQVWAVAFRPPGGA
GVRAGRLASASDDKSISLYDYS
NT seq 969 nt   +upstreamnt  +downstreamnt
atgaagctcgcggggctcaagtcggtggacggcgcccacgaggagtccatctgggcggcg
gcgtgggcgcccgccgccgaccaccgccccacggcggtgctcctgacgggcgcgctcgac
gagaccgtccgcgcctggcgccccgacgatctcgccgccttggggccccctgcaaggggc
cacgcgctcggggtcgtctccctcgccgcccaccccgcgggcgcgctcgccgccgccgtg
tcgctcgacagcttcgtccgcgtcttcgacgtcgactcgggggcctccgtcgccacgctc
gaggcgccgccgtccgaggtctggggcgtccagttccaccccaagggtaatgctctggct
gcagctggtggtggaagtgggtcagtaaagctctgggacacagagaagtggcagccaatt
acgagccttgccatcccacgtcctgagggagctcgccctgacaagacaggcagtggcaag
cttgtcctctcagttgcctggagccctgatggaaagctcttggcctgtgggtccatggac
ggcaccatcgctgtgtacgacgcaatccgcatgaagttcctccaccaccttgaggggcac
cacatgccggtgcggtccatggtattctcccctgtagacccccatgtgctcttcacggcc
tgtgatgaccgccacatccacatctatgatgccaaggagaaggccctcattggggccatg
tcgggccacgcgagctgggtgctgagcatcgatgtgagccccgatggcttggcagtggca
acgggatccagtgaccgcacagtccggctctgggacatcaacatgaggagctcggtgcag
acaatgagcaaccactctgaccaggtctgggctgttgccttccgaccgcctggtggagct
ggagtccgtgcaggccggctggctagcgcgtcagatgacaaaagcatctccctgtatgat
tactcatag

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