Panicum virgatum (switchgrass): 120686105
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Entry
120686105 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120686105 isoform X1
KO
K17302
coatomer subunit beta'
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120686105
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120686105
Membrane trafficking [BR:
pvir04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
120686105
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
120686105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pkinase
PK_Tyr_Ser-Thr
WD40_Prp19
WD40_CDC20-Fz
WD40
Beta-prop_EML_2
Beta-prop_EML
WD40_WDHD1_1st
EIF3I
WDR55
Motile_Sperm
Beta-prop_WDR90_POC16_2nd
ABC1
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
PEP5_VPS11_N
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Seadorna_VP7
APH
RIO1
YukC
DUF655
Motif
Other DBs
NCBI-GeneID:
120686105
NCBI-ProteinID:
XP_039824194
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All DBs
Position
8N:complement(19467233..19521769)
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AA seq
847 aa
AA seq
DB search
MMSDPMEKGINCKTEGGMDSTARRYDMYEKMLENILQDPSEPPVSLPLEFLKAITDNFSS
NHELGRGGFGVVYKGILRSGKVIAVKKIYDRYPFEKDSSLDEISRVMGIMHPNVVQLIGY
CAETKMDTMTHDSGKLIVAEIRSRLLCFEYISNGGLDMYISKEHLELGWDEVYKIINGIC
SGLDALHEENIIHLDLKPQNVLMDGNMMPKIVDFGLARLLRENKSKIYTQRPTGTVGYMA
PEYYSDGKISPKADIFSLGVIMIELLTGSRKHPRSTPHYSYTSYDDNTLDSTQANLQQFT
GNVLGKWKKIFQKTLNDASVIQVYTHQLKQLIDIALKCVDSDVNKRPTAADILQFFDHNE
AGGSSCDPICKYSQVRDLISVQPIELKIPMADPNKFLRSSSLLHLNNNTVGHVAYRILSN
SLSPHLVWPSFGFVPPGCRYTIAVTMRYQQNPPPRKDMFFTLESTRASDQEIKNAISRYL
IYDHNDFFTKAKDKGRQVHEAKLTAVYGNSDQSEIKIVPLEKSDYMLGSIDVHPTKPWIL
IVVRRKRETSIIIWDYNTEEMARLPAHRDRKVSPLTAKFLARKKWIIVGCSSGYIKVYSY
CTLFSETESFKAHEYGVVTSLELHQIEPYVLSAVTEGPEVPNTSVWYNPMDKIKLWDWEN
GWKLIRTFNTDTYIRQVKFNPNDVNIFATTTSTGPIKVWDTSSTDSVYEFSGMRYARCLD
FFSRDGVLHIITVQDSDTRKATIWDCQKSKCVATLKGHVDSVNVVFSCPEFPVLITGSVD
GSIRLWNSSTFSLLGVLNCGICHVMAIAWLKKPGRIAILHRDGLAITEIDLSKQLLASEG
PYESEAS
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgatgtccgatcccatggagaaggggattaactgcaaaacagaaggaggaatggacagt
acagcaaggagatatgatatgtacgagaagatgctggagaatatactgcaggatccaagt
gaaccgccagtctctttgccactggaatttttgaaagccatcacagataatttctccagc
aaccatgaactcggcaggggtggctttggagtggtttacaagggaattctccggagcggg
aaagtcattgcagtgaagaagatttacgataggtacccttttgagaaggacagctcttta
gacgagatcagccgtgttatggggatcatgcacccaaatgtggtacagctcataggttac
tgtgccgagactaagatggatacaatgacacacgacagtgggaagctgattgtggcagaa
atacgctcacggttactctgcttcgagtatattagcaatggaggcctcgacatgtatatt
tccaaagaacatttggagcttggctgggacgaggtatacaagataattaatgggatttgt
agtggcttagatgcccttcacgaggaaaacattattcatctggacctgaagccacagaat
gtgttgatggatggtaatatgatgcctaaaatagtcgactttggtttggcaaggctcttg
cgcgaaaataaatctaaaatatacactcagaggcccacagggacagtcggatatatggca
ccggaatactatagtgatggcaaaatatctcccaaggcagacatatttagtttgggtgtt
ataatgattgagttactcacaggaagtaggaagcatccccgaagcacgccacattattcc
tacacctcttatgacgataataccctcgatagtacccaagcaaatctgcagcaattcacc
gggaatgtgcttggcaaatggaagaaaatatttcaaaaaacactgaatgacgcatcagtc
attcaagtttatacccatcagttgaagcaattgattgatatagccctaaaatgtgtggac
agtgacgtaaataaaagacctactgcagcagatatactgcaatttttcgatcataatgaa
gcaggaggaagttcatgcgatccaatctgcaaatatagccaggttagagatctcatcagt
gtgcagcccatcgaactcaaaatccccatggcagatccaaacaagttcctgcggtcttca
agcttgctacacttaaataacaacacagttggacatgtcgcctacaggatcctttccaat
agtctatcgccgcatttagtttggccgtcatttggttttgtgcctcccgggtgcaggtac
actattgctgtcacaatgcgctaccagcaaaatccaccacccagaaaagacatgtttttt
acactagagagcaccagagcgagtgatcaggaaataaagaacgccatttcaaggtattta
atatatgaccacaatgatttttttacaaaagcaaaagataaaggccgccaggtgcacgag
gcaaaacttactgcagtttatggaaatagtgatcagtccgaaatcaagattgtacccctg
gaaaagtctgattatatgttgggttccattgacgtgcatccaacgaagccatggattctg
attgttgtccgtaggaaaagggagacctcaattatcatctgggactataacacggaggag
atggcacgcctccctgctcaccgagatagaaaagtgtctccgttgactgcaaagtttctt
gcacgaaagaagtggattatagtcggatgttcgtctggttacataaaagtatacagttat
tgcactctgttttctgaaacagagagttttaaagctcacgaatatggtgtcgtaacctcg
ttggaactccatcaaattgagccttatgtactatcggcagtcaccgaagggcccgaagtg
ccaaatacatccgtgtggtataacccaatggacaagataaagttgtgggactgggagaac
ggctggaaactaattcgcacatttaacacggatacatatattcgtcaggtcaaatttaac
ccaaatgacgtaaatatatttgctactacgacttctactgggccgataaaggtctgggat
accagttcaacagattcggtatacgaattttctggaatgcgatatgcaaggtgtttggat
ttcttttcacgagatggcgtgctgcacataattactgttcaagattcggatacgagaaag
gccacgatatgggattgccagaaatcgaaatgtgttgcaacgctcaaagggcacgttgat
tctgttaatgtagtcttttcttgtcctgaatttccagtactgattacaggttcagtcgat
gggtcaattcgtttatggaactcaagtactttcagtcttctgggtgtactgaactgtggc
atctgtcacgtgatggctatagcatggttaaagaaaccaggaagaattgcaatcttacat
cgtgatggattggctattactgaaattgacctgagcaaacagttgttagcatctgaagga
ccgtacgagtcagaagcaagctag
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