Panicum virgatum (switchgrass): 120686156
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Entry
120686156 CDS
T07260
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
120686156
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
120686156
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
120686156
NCBI-ProteinID:
XP_039824265
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Position
8N:complement(1241376..1245947)
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AA seq
690 aa
AA seq
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MAASALGTTRSLLLLVILLIAAAVGEPSSSSLLPLAATTTVNAAANGRGVTLRIDRRQVL
VDNGVVQVTLSKPQGHITGVRYNGERNLLHYAGEENSGGYWDVVWNYPGSHHPRGMIDML
DSTEFNVVSSSQEQVELSFRSTYNPSRQDSVRLNVDKRLVVLKGSSGFYCYAIFEHRGSW
PAMNISEARLAFKLNTDKFNYMAISDDIQRYMPSTADRDEPHGTPLAYKEAVLLTNPKEP
QFKGEVDDKYEYSLDNKDNVVHGWISSSHPNPTGFWVITPSNEFKSGGPMKRELTSHVGP
TSLTMFLGTHYIGDDIVLTIGDGEYWKKVLGPVFIYLNSSPKRGDLRALWDDAKAQAQNE
ASKWPYSFPKSLDFPKAADRGSVTGRLLVRDRFMSNDDMPAGMAYVGLAAPGQPSSWATE
CKGYQFWTTADSCGSFTIGNVRAGVYNLYAWVPGVLGDYMYTCHVTVTPGCAIDLGDLVF
LPPRSGPTLWEIGVPDRTAAEFFVPDVDPRYANRLFLHKDKYRQYGLWERYAELYPDGDP
VFTVGQSDHSKDWFFAHVTRKVGNGYVPTTRQIRFNLDRVVADGTYTLRIALAAAQMSRL
QVLVNGGGARRGGVVFTTPEFGGGNAIARHGIHGVQWSFEFPIRGYLLQEDENSISITQT
RAFGEFLGVMYDYIRLEGPPGSWRDPTRGA
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggccgcttccgcccttggcacaacaaggtcattgctgctgctggtcatcctgctcatc
gccgccgccgtcggagagccgtcctcgtcgtccctgctacccctcgccgccaccacgacg
gtgaacgccgcagccaatggccgcggcgttacattgcgcatcgaccgccgccaggtgctt
gtggacaacggcgtggtgcaggtgacgctgtcgaaaccccaggggcacatcaccggcgtc
cgctacaacggcgagcgaaacctcctgcactacgccggcgaggagaactcgggagggtac
tgggatgtggtgtggaactatcccggctcccatcacccaagagggatgatcgacatgtta
gacagtacggagttcaacgtcgtgtcctcaagccaagagcaagtggagctttctttcagg
agtacatataatccatcacgtcaagatagtgttaggctaaacgttgacaagagacttgtg
gtgctgaaaggcagctccgggttctactgctacgccatctttgagcacaggggcagctgg
cctgccatgaacatttcagaggctcggctcgctttcaaactcaacacggacaagttcaat
tacatggcgatttcagacgacatacagagatacatgcccagcacagcagacagagatgaa
ccgcatggtactccactggcctacaaggaggctgtcctgctcactaacccgaaggagcca
cagttcaagggagaggtggatgacaagtatgagtactcgctggacaacaaggacaacgtc
gtccacggatggatcagcagcagccaccccaaccccacgggattttgggtcatcactcca
agcaacgagttcaagagcggcggccccatgaagcgggaactcacttcccacgttggaccc
acctccctcaccatgtttctgggaacgcattacattggggacgacatcgtcctcaccatc
ggcgacggcgagtactggaagaaggtgttggggcctgtcttcatctacctcaactccagc
ccgaagcgaggtgacctccgtgccctctgggacgacgccaaggcgcaagcccaaaacgaa
gccagcaagtggccgtacagtttccccaaatcactggacttccccaaggccgctgacaga
ggctcggtcaccggcaggctactggtcagagacagattcatgagcaacgacgacatgcca
gccgggatggcgtacgtcgggctcgccgcgcccgggcagcccagctcctgggcgacagag
tgcaagggctaccagttctggacgacggccgattcctgcggcagcttcaccatcggcaat
gtccgggcgggggtgtacaatctctacgcatgggtcccgggggttcttggagactacatg
tacacttgccatgtcaccgtaacgccaggttgcgccatcgacctcggcgatctcgtgttc
ttgcccccgaggtcaggcccgacgctgtgggagatcggagtccccgaccggaccgccgcg
gagttcttcgtccccgacgtcgaccccagatacgccaaccggttgtttctgcacaaggac
aagtacaggcagtacggcctgtgggagaggtacgccgagctgtaccctgacggcgatcct
gtcttcacggtcggccagagcgatcactccaaggactggttctttgcgcatgtcacgagg
aaggtgggcaatggctacgtgccaacgacgcgtcagatccggttcaacctggaccgcgtc
gtggcggacggcacctacacgctgcgcatcgcacttgcagctgctcagatgtccagactg
caggtgctcgtgaacgggggcggtgcgaggaggggcggggttgtgttcacgacgccggag
ttcggcggcggcaacgcgatcgcgcggcacggcatccacggcgtgcagtggagcttcgag
ttcccgatcagggggtacctactgcaggaagatgagaacagcatcagcatcacgcagacg
agggccttcggcgagttcttgggggtcatgtacgactacatccggctggaagggcctccc
ggatcctggcgagaccccacgcgaggggcctga
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