Panicum virgatum (switchgrass): 120686248
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Entry
120686248 CDS
T07260
Name
(RefSeq) Fanconi anemia group J protein homolog isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
pvir03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120686248
03460 Fanconi anemia pathway
120686248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120686248
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120686248
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
120686248
FA (Fanconi anemia) pathway
Downstream FA components
120686248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
Motif
Other DBs
NCBI-GeneID:
120686248
NCBI-ProteinID:
XP_039824364
LinkDB
All DBs
Position
2K:complement(54915480..54925848)
Genome browser
AA seq
1315 aa
AA seq
DB search
MGAAAMAGVDADSDDFVSPSTSAPPTPRARTDGGVYHVGGVPVEFPYKPYGTQLAFMGRV
IATLDRARRQGQSHALLESPTGTGKSLSLLCSALAWQRLYPLRSPPTAPPTPPDPFLHGG
GFVADDTQPQATPVIPEKAAKKKNAPTIYYATRTHAQITQVVREYRKTSYRVRMAILASR
KHYCVNKLACMSDNIDEQCKLLLDDNVQGSSCSEFKNAQKLSRHPSLQIGGCYEVHDIED
LVRVGRKVKGCPYFAAQHMAEAAQLVFCPYNYLISPVVRRAMDIDISGSIIILDEAHNIE
DTARDAGSVDVDEESLYLLQAELQNLATDEAVAMIYQPLHDVIQGLMGWISEREDNLQNH
EFGHPASYWTGERAVKELERAGITPTHFSVLQECATKAVKAASDTESDGSHLSGGRAMTL
ESLFSSLSYFFANNGCNSCDYQLALQRFVKKESSNNEISSKCTMSLWCLNPAVVFREIAD
LTLSVILTSGTLSPMGSFASELGVQFEACLEAPHVINVNSQVFAAVLSSGPTSRKLNASY
KTADNSSFQDELGTSLEEICRIVPGGALVFFPSYKLLDKLQVRWSQTGQWARLNAQKHVF
VEPKGSTEELEPVLKGYYDAILGKAPVKKGRGSAKQIVKNRSTKNSSQESAKAGAALLAV
CRGKVSEGIDFSDDNARVVVIVGIPFPNINDVQVKLKKRYNDSFKSSKCLLSGSEWYCHQ
AFRALNQAAGRCIRHKSDYGGIILIDERYQEDRNLVYISKWLRNAIKKHDSFQDTIDGLQ
RFFQNAEEKIKIKDHNMFPKIKLESEALSSLSDKRKLPWPELSLSNHSALQKNQKVKTEC
LSQKVPNIDEVAADQKKVAMCYTSPEVSKISSRSSLFVKKEISGTPNSPQMAYQLPACKV
QSDSEGVADTEANYEVKTEVINIEEDDFKYEVKTEVINIEEDDFKPRYKMTILNPLEGRS
PQSTPVEETSPLASPSNYSEVNISVGINNRNLPCLSTSASTPERTTYRDCHETLINRSVN
SHCEKKRRLRSPMSCCTYSDHSNSAKKSHCRTDYAVNILHGDLNRNAELCCKNMSMSRCE
NVELERSYTAEEVSEKTPTQKKLLISCIRCKTALGLEDGLVTCSQSSSSKFYLAYLLRHG
LSTIGFPEDGLPESTATEIELLECDASSLNQNIFGKFSGQGSCHHSGVWSAKDGCVYKAV
TCPFCFSENTCATILGVQVLATDKPNQQLVQKVLLFSERLDVKPEPSNGQASKIRRDFSN
SISPLPVMDLVSFAYKPLKKHPVPLNSRRSKVSYLLPLLLSFAVLLVITFPEFEV
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccgccgccatggccggcgtcgacgccgactccgacgacttcgtctcgccgtcg
acatcggcgcctcccaccccgcgagcgcggactgacgggggcgtgtaccatgtgggcggc
gtgccggtggagttcccctacaagccctacgggacgcagctggcgttcatggggcgggtc
atcgccacgctcgaccgcgcgcggcggcaggggcagtcgcacgcgctcctcgagtctcct
accggcaccggcaagtcgctctccctcctctgctccgcgctcgcctggcagcggctctac
ccgctccgctccccgcccaccgcgccgcccactccccccgacccgttcctccacggcgga
ggattcgtcgccgacgatacccagccgcaggcgacgccggtcatcccggagaaggcggcc
aagaaaaagaacgctccgaccatctattacgcgacgaggacgcacgcgcagataacccag
gttgtccgggagtaccgcaagacgtcgtaccgagtgcgcatggccatcttggcctcaagg
aagcattactgtgtaaataagcttgcttgcatgagtgacaacattgatgagcaatgcaag
ttgctgctagacgacaatgttcaaggttcctcatgctcagaattcaagaatgctcagaaa
ctaagtcgacatccatcccttcagattggtggctgctatgaagttcatgatattgaggat
cttgtcagggttggacggaaagtgaagggatgcccatactttgctgcacaacacatggca
gaagcagcacagttggttttctgcccgtataattacctgatcagtccagttgtcaggagg
gcaatggacattgatatcagtggctcaatcattattcttgatgaggcacacaacatagaa
gatacagcacgtgatgctggaagtgttgatgttgatgaagaatcactttacttgttgcag
gcagaactgcaaaacttggccactgatgaggctgttgcaatgatataccaacccctacat
gatgttattcagggtcttatgggttggatttctgagcgggaggataatctgcagaatcac
gagttcggacatcccgcttcatattggactggtgaaagggctgtgaaagaactcgagcgg
gctggtattactccaacgcatttctcagtattgcaagaatgtgcaacaaaggcagttaaa
gctgcttctgatactgaatcagatggatcacacttaagtggtggtcgtgctatgacacta
gagagtctattttcttcattgagttatttttttgctaataacgggtgtaattcatgtgat
tatcaacttgctttgcagcgttttgttaaaaaggaaagtagcaacaatgaaatttcttca
aaatgcacaatgagtttatggtgtctcaatcctgctgttgtctttcgagaaattgcagat
ctaaccctttcagtaattctgacatctggcacactttcaccaatgggttcatttgcatct
gaacttggtgtccagtttgaggcttgcctggaagctcctcatgtaattaatgtcaattct
caggtctttgcagctgttctatcatctggtccaacaagccgtaaattgaatgctagctat
aaaaccgcagacaattcttctttccaggatgaacttggaacttcactagaagaaatatgc
agaattgtgcctggtggtgctctagtgttttttcctagctataagttgttggacaaattg
caagtgcgctggtctcaaacaggtcaatgggcacggcttaatgctcaaaaacatgtgttt
gttgagcccaagggtagtactgaggaactcgagcctgttttaaaagggtactatgatgct
attcttggtaaggctcctgtcaagaaaggcagaggtagtgcaaaacagatagtgaagaat
cgatcgacaaagaattcatcacaggaatctgcaaaagcaggagccgctcttcttgcagtt
tgtcgcgggaaggtatctgaagggattgacttctctgatgacaatgctagagttgtggtt
attgttggcatcccatttccaaatataaatgatgttcaagtaaagctgaaaaagagatat
aatgattcattcaaatcatcaaaatgtttgttgagtgggagtgaatggtactgccatcag
gcatttcgtgctttgaatcaagctgcaggccgatgcattcgtcataaatctgactatgga
ggcataattttgattgatgagcgatatcaggaggacagaaatctcgtttacatttccaaa
tggcttaggaatgcaatcaagaagcatgatagctttcaggatacaatagatgggttgcaa
aggttctttcaaaatgccgaggaaaaaataaaaatcaaagatcataacatgttccccaag
ataaagttggaatccgaagcactttcatctctcagtgataaaagaaagctaccatggcca
gaattaagtttgtcaaaccactcagcactgcaaaagaatcagaaggtaaagactgagtgt
cttagtcagaaagttccaaacattgatgaagtggcagcagaccaaaaaaaggtggctatg
tgttatacgtcaccagaagtatcaaaaatctcatcgagatcttctcttttcgtaaagaaa
gagatctctgggactcccaacagtcctcaaatggcataccaactgcctgcctgcaaagtt
caatctgattccgaaggtgtagctgatactgaggcaaactatgaagtcaaaacagaagtt
atcaatattgaagaggatgattttaaatatgaagtcaaaacagaagttatcaatattgaa
gaggatgattttaaacctcggtataagatgacaatcttaaatccattagaaggcaggtca
ccgcagtctactccagttgaggaaacttctccattggctagccccagcaactattctgag
gtaaacatctcagtggggatcaacaatcgaaatcttccttgtctatccacatcagcatct
actcctgaaagaaccacctacagagactgtcatgagactttgatcaacagaagtgtaaat
tctcactgcgagaaaaagagaaggttgagatccccaatgagctgttgcacttactcagat
cattctaattctgcaaagaaatcacactgccgtacggattatgctgttaacatactgcat
ggggatcttaatagaaatgctgaactgtgctgtaagaatatgagcatgtcaagatgtgaa
aatgttgagcttgaaagaagctacacagcagaagaggtctcagaaaagacgcctacacaa
aaaaagcttctcattagttgcattagatgcaaaacagctcttggtttagaagatgggctt
gttacttgttcacagtcttcatcatcaaaattttacttggcatatcttttgagacatgga
ctatcaactattggctttccagaggatggtttaccagaatcaactgcaacagagatagaa
ctattagagtgtgatgcttcttcactcaaccagaatatctttggcaaatttagcggccag
ggttcatgtcatcattctggtgtatggtctgccaaggatggatgcgtgtacaaggcagta
acctgtcctttctgcttttctgaaaacacatgtgccacgatcctcggtgtgcaagttctt
gcaactgataaaccaaatcaacaattggtgcaaaaggtgctcttgttcagtgagcgtttg
gatgtcaagcctgagccatctaatggacaggcttcaaaaatccggagagattttagtaac
tccatctcaccgctaccagtaatggaccttgtgtcttttgcatataagccattgaagaag
catccagtgccgctgaactcaagaaggtccaaggtcagttacttactgccattgctgtta
tcttttgccgttctgctcgtgatcactttcccagaatttgaagtgtaa
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