Panicum virgatum (switchgrass): 120686260
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Entry
120686260 CDS
T07260
Name
(RefSeq) DNA mismatch repair protein MLH3-like isoform X1
KO
K08739
DNA mismatch repair protein MLH3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120686260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120686260
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
120686260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Flg_bb_rod
Motif
Other DBs
NCBI-GeneID:
120686260
NCBI-ProteinID:
XP_039824381
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Position
2K:complement(54926820..54958453)
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AA seq
1221 aa
AA seq
DB search
MQTIKRLPESAHSSLRSSVVLSDLPRVVEELIYNSIDANASKIDIEINVGACYIKVEDDG
CGITRDELVLLGEKYTTSKFHNVMEDGELSPRNFGLNGEALASLSDISVVEVRTKARGRP
NSYCKIIKGSKCLHLGIDDKREIVGTTVVVRELFYNQPVRRKQIQSSEKRELHHVKKCVL
QIALIHPQISIRLLDTDSEDELLNSAFSSLPLPLISKSFGDDVSRCLHEISASDQGWVLS
GHISGPADVFHTKDFQYLYINSRFVNRNPIHNMLNNLASSFQSSIMRTNEEIDVQSRKRQ
KTDVHPAFLLNFCCPRSSYDLHFEPTKTIVEFKDWQTVLLFFEQTITNYWKKNALQSPKA
DGLCGGDTSVPLKNDVKLNKGLLRHHYVQNNEEYANFQDTQQNNAVRDTNSDISATGALK
DSHCFSFDMEPSIQHVSFSGQITNSPWLPDNVASIDYKLRYKVMQSPERINYRWLEDGPS
QLDADLSSVNPTGWKRQRTEGLFHECAYSGNFGMLEYIPTEGFLAHEQESELIGSEVETR
EPCFGSFNRSDKMTSDLVQNQINIKALTSGWDGSYVEFDKTNGDCLLNEATDTITDISFP
EMLQFSDGFYHNDVNTSRSFCRVSRKCRINKKLGTATVCVEGLEADTVSQMNFPDIHAVW
NSDLMDRPCIGDTSHHFSRLSSFTDTPCSRARTGLILHKKSDKSFGSWNCENIDSDVRFA
LDRFSNVSSMICEGTKNLDNFDSAIQPLNYFNKDCGSTDQFGSEDDLIMWKSKFDTRFSV
DISPERSDNGCHLNIPSSNIANANTLAQDLLNQHNLGLDQRSRPSKGSRSRSHSAPPFYR
VKQKFSRLNELLSKLAIDGDKGICTNSPEGNASTPVDISRMSSTQPVPEADSSEFSDLSF
SSNGFVKLGDACSDGLEDSSAQITKWRDDSGQHTVSNLPHGPYEFYDDVLSISSGTLHLS
CNSLVPECVDKNCFEEARVLLQLDKKFIPVISGETILLVDQHAADERIRLEELRRKVLSE
EGHVVTYLDSEEELSLPETGFQLFQKFAEQIRKWGWIISSGSNSSESFKKNMNILRRQTR
LVTLVAVPCILGVNLTGKDLMEFIQKLDETDGSSAMPPAVLRILNFKSCRGAIMFGDPLL
PSECCLIIEELKATSLCFQCAHGRPTTVPIVNVASLHGELARHQMLSGRQAETWHGLAHH
GPSLERAQMRLKQLRKLRRGL
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccataaagcgcttgccggagagcgctcatagctccttgcgttcaagcgttgtt
ctgtctgacctgccaagggttgttgaggagttgatatataatagcattgatgcgaatgcg
agcaagattgacattgaaataaacgtcggagcatgttatataaaagtggaagatgatggt
tgtggtattacacgagatgaattggttctcttgggagaaaaatatacaacatccaaattt
cataatgtgatggaggatggggaacttagtcctagaaattttggactaaatggagaagca
ctcgcatcactttctgatatctctgtggttgaagtcaggacgaaagctcgtgggagacca
aattcatattgcaagataataaagggatctaaatgcttacatctgggaatagatgacaag
agggaaattgttggcaccacagttgttgttcgggagcttttttacaatcaaccagtacgg
aggaaacaaatacaatctagtgagaaaagagaattacatcatgtgaagaagtgtgttctg
caaattgcgcttattcatccacagatttcaatcagactccttgacactgacagcgaagat
gaattgctaaactcagctttttcgtcattgcctttgcctcttatatcaaaaagttttggg
gatgatgtctccagatgtctccatgagatatctgcctctgaccagggctgggttctttca
gggcatatatctggacctgcagatgtgtttcatacgaaggattttcaatacttgtacatc
aactcaagattcgtgaatagaaacccgattcataatatgctcaataatctggcatctagt
tttcaatcttccattatgaggacaaatgaagaaattgatgttcagagcaggaagaggcag
aagactgatgtacaccctgcttttctactgaacttttgctgtcctagatctagctacgat
ctacattttgagccaacaaaaaccattgtggaattcaaggattggcaaaccgtcttgctt
ttctttgaacaaactatcacaaactactggaagaagaatgcactgcaatcaccaaaagct
gacggactttgcggtggcgataccagtgtgcctctgaaaaatgatgtgaaattgaataag
ggactcctaaggcatcattatgtgcagaacaatgaagagtatgctaacttccaagacact
cagcagaataatgcagtcagagataccaacagtgatatcagtgcgacaggagcactgaaa
gactcacactgcttttcttttgatatggagccatccatacagcatgtctctttttctgga
cagatcactaattcaccctggctccctgacaatgttgccagtattgattacaagttaagg
tataaggtaatgcaatctcctgaaagaataaattatcggtggttagaggatggtccttct
cagttagatgctgatctttcaagtgttaacccaactggttggaaaaggcaaaggacagaa
ggtctattccatgagtgtgcatattctggtaattttggaatgttggagtacataccaact
gaaggttttttagctcacgaacaagaatctgagttgattggttcagaagttgaaacaaga
gaaccttgctttgggtctttcaataggtcagacaaaatgacctctgatttggtgcaaaat
caaataaacataaaggcactcacatctggctgggatggatcctatgttgagtttgataaa
acaaatggggattgcctactcaatgaagctacggatacaattactgatatttctttcccc
gagatgttacagttcagtgatggattctatcataatgatgttaacacctccaggagcttc
tgtagagtttcgagaaagtgcaggatcaataagaagttagggactgcaactgtatgtgtt
gaaggccttgaagctgatactgtaagccagatgaacttccctgatattcatgctgtgtgg
aacagtgacttgatggataggccctgcattggggatacttctcatcatttttctcgtcta
tcctcgtttactgatacaccttgcagtcgtgcaaggactggcttgatacttcacaagaaa
tcagataaaagctttggttcttggaactgtgaaaatattgacagcgatgttagatttgct
ttggacagatttagcaatgtttcatcaatgatatgtgaaggaactaaaaatttggataac
tttgacagtgcaatacagccgcttaattacttcaataaagattgtggttcaactgaccag
tttggttctgaagatgacctgataatgtggaaatcaaaatttgacacgagattttcagtt
gatatttctcccgagagaagtgataatggttgccatttgaacatcccttcttccaatatt
gcaaatgctaacacacttgctcaagatctgctgaatcaacacaaccttggactggaccag
agatccaggccttccaagggcagtagatctaggagtcattctgctccaccattttataga
gtgaaacagaaattctctcgattaaatgagctgctgagcaaattggccatagatggcgat
aaaggtatctgcactaacagccctgaaggcaatgcatctacacctgtggatatctcacgt
atgagttcaacccagcctgttcctgaggctgatagcagtgaattttcagacttaagtttc
agctcgaatggatttgtgaaacttggagatgcatgttctgatgggcttgaggattcatct
gctcagataactaaatggcgagatgactctggccagcatacagtttcaaacttgccacat
ggtccttatgaattttatgatgatgtacttagcatttcttctgggaccttacatctctct
tgtaactcgctagttcctgaatgtgttgacaagaactgctttgaggaggcaagggtcttg
ttgcagctggacaagaaatttattcctgtgatatctggggaaactattctccttgttgat
cagcatgcagctgatgaaaggatacgtttagaggagctccgaagaaaagttttatcagaa
gaaggccatgttgtcacttacttggactctgaggaggaattatctctccctgagactggg
tttcaattgttccagaagtttgctgagcagattcggaaatggggctggatcatcagcagt
ggtagcaattcctctgaatcattcaaaaagaacatgaacattctgaggagacaaacccgt
cttgttactcttgttgctgttccatgtattttgggtgtcaatttgacagggaaagatctc
atggaatttatccagaagcttgatgagactgatgggtcgtcagctatgcccccagcagtt
ctccgtattctcaacttcaaatcttgcagaggggcgatcatgtttggtgaccccttgcta
ccatccgaatgctgtctgattattgaagagctgaaagcaacatctctatgcttccagtgt
gctcatgggcgcccgaccacggtgcctatagtgaacgtcgcatctctccacggcgagcta
gcgaggcaccaaatgctgagcggaaggcaggcggagacctggcacggcttggcgcatcat
gggcccagccttgagcgtgctcagatgcgcctcaaacaattgagaaagctgcgccgtggc
ctgtag
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