Panicum virgatum (switchgrass): 120686261
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Entry
120686261 CDS
T07260
Name
(RefSeq) rhamnogalacturonate lyase-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
120686261
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
120686261
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
RhgB_N
EMC7_beta-sandw
GldM_2nd
Motif
Other DBs
NCBI-GeneID:
120686261
NCBI-ProteinID:
XP_039824382
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Position
8N:complement(33397979..33402154)
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AA seq
707 aa
AA seq
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MAKACWLPFLVAILLVAMAAVTPRLAAQASPEEAAGARGVRLHVGQRQVVVDNGVVQVAM
SVPEGRITRVGYGGEPNNLLEYDAGQGDSGGYWDSVWNYPDSDLPGQYNTLDSTEFNVVS
SSEDQVELSFRSTYNPSLQNSFQLNIDKRLVMLRGSSGFYCYAIFEHARDHPAMNITEAR
LVFKLNMGKFNYMAITDDIQRYMPSAIDRDEPRAVPLAYKEAVLLVDPKEPQFRGEVDDK
YQYSLDNKDNVVHGWISGGELNPMGFWVITPSNEFKSGGPFKRELTSHVGPTSLTMFFGT
HYIGKYMVAKIADGESWKKVLGPVFIYLNSSPKSGNNLQALWEDAKAQAQGEARNWPYSF
LASPDFPKAAERGSIAGRLLVRDRYVSKKDMPAAMAYIGLAVPGQPGSWATESKGYQFWT
RAASDGAFSIDNVREGVYDLYAFVPGILGDYSYSSPLTIAPGRVMSVGDLVFEPLRSGPT
LWEIGVPDRAAAEFYIPDPDPKYINRLFVNKDRYRQYGLWERYAALYPEKDLIFTVGRSD
ESKDWFFAQVTRKVGQDSVPTTGQIRFNLDRVMAGGTYTLRIALAASETCRLQVQVNGGA
RRDGSGVFTTPEMGDDNAVARHGIHGLQWSLEFAIGGHLLLQGDNAIDIKVAQAGAGGPA
AARIAGVMYDYIRLEGPSSGGVLKIAPLGRVWMGILFGSSMAFLVIM
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggctaaagcctgctggttgccgttcctcgtagccatcctacttgtcgccatggccgcg
gtgacgccacgacttgcggcgcaggcctcgccggaagaggctgccggtgcccgtggtgtc
aggttgcacgtcggccagcgccaggtggtcgtggacaacggcgtggtgcaggtggccatg
tcggtgccggagggccggatcacccgcgtcggctacggcggcgagcccaacaacctgctg
gagtatgacgccggccagggcgactccggcgggtactgggattcggtttggaactatccc
gactccgatcttccggggcaatacaatacgttggatagtacagagttcaacgtagtgtcc
tcaagtgaagatcaagtggagctttctttcaggagcacatacaacccatcgcttcaaaac
agctttcagctaaacatcgataagaggcttgtgatgctcagaggtagctctgggttctac
tgctatgccatctttgagcatgccagggaccaccctgcgatgaacatcaccgaggctcgg
ctcgtcttcaagcttaacatgggaaagttcaattacatggccattacagacgacatacag
aggtacatgccaagtgctatcgacagagatgaacctcgtgctgtcccactggcttacaag
gaggctgttctcctggttgaccccaaggaaccccagttccgaggagaggtggatgacaaa
taccagtactcgctggataacaaggacaacgttgttcatggatggatcagtggcggtgaa
ctgaaccccatgggtttctgggtcatcacgcccagcaacgagttcaagagcggcgggcct
ttcaagcgggagctcacatcccatgtcggccccacatccctcacgatgttttttgggaca
cattacattggtaagtacatggtggccaagatcgccgacggtgagagctggaagaaagtc
ctaggtccggtgttcatctacctcaactcaagccccaagagcggcaacaacctccaagct
ctctgggaagacgccaaagcacaggcacaaggagaggcgaggaactggccctacagcttc
cttgcatcgccagacttccccaaggcagccgagaggggatccattgcagggaggctcctc
gtcagagacaggtacgtgagcaagaaagacatgcctgctgcgatggcttacattgggctc
gccgtgcccgggcagcctggctcctgggccacagagagcaaggggtaccagttctggaca
agggccgcctccgatggagctttcagcatcgacaatgtccgggaaggagtgtatgatctt
tacgcgtttgttcccgggattcttggagactactcctacagttcacctctaaccatagcc
ccaggtcgtgtcatgagcgtcggtgaccttgtgttcgagcccctgaggtcaggcccgacg
ctgtgggagattggtgtcccggaccgggcagcagcggagttctacatccctgatcctgac
cccaagtacatcaacaggctcttcgtcaacaaagacaggtacaggcagtacggcttgtgg
gagcgatacgctgccttgtacccagagaaggacctcatcttcacggtcggtagaagcgac
gaatccaaggactggttctttgcgcaagtcacaaggaaggttggccaggactccgtgcca
acgacagggcagattcggttcaacctggaccgcgtcatggcaggcggcacctacacgctg
cggatcgcccttgctgcttctgaaacgtgcaggttgcaggtgcaagtgaacgggggtgcg
aggagagacggcagcggggtgttcacgacgccggagatgggggacgacaacgcggtcgcg
cgccacgggatccacggcctgcagtggagcctcgagttcgcgatcggggggcacctgctg
ctccaaggtgacaacgccatagacattaaagtcgctcaggccggagccggaggtccggcg
gcggccaggatcgccggggtcatgtacgactacatccgcctggaagggccttcctccgga
ggcgttctgaagattgcgccccttggccgggtttggatggggattttgtttgggtcttcg
atggccttcctcgtcatcatgtga
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