Panicum virgatum (switchgrass): 120686517
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Entry
120686517 CDS
T07260
Name
(RefSeq) glutamate-rich WD repeat-containing protein 1-like
KO
K14848
ribosome assembly protein RRB1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120686517
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
120686517
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WD40
WD40_Prp19
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_EIPR1
CAF1C_H4-bd
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
EIF3I
Beta-prop_EML
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
NBCH_WD40
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_1st
WD_LRWD1
MIOS_WD40
Motif
Other DBs
NCBI-GeneID:
120686517
NCBI-ProteinID:
XP_039824669
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Position
8N:complement(1288541..1292750)
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AA seq
478 aa
AA seq
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MGRIKKAKKVKSKEAKKVEASSSSNPAVASGPAKVWQPGVDTLEDGEELQFDPEAYNYLR
GFDIGWSCLSFDIVRDQLGLVRSEFPHTLYGVAGTQAEKASSNYIGIFKLSNIRGKKREP
IPASTVDGDTDVDSDSSSDEEDEEIIEDTKPILHLKKVAHARCVNRIRSMTQKPHICATW
GDTGNIQVWDLSSYLNSLAEAESGAPAPKEDDIIHKHLPLKVFSGHKDEGYAIDWSPLVT
GRLVSGDCNKCIHLWEPTPNNWNVDANPFVGHTASVEDLQWSPTEADVFASCSVDGTIAI
WDTRTGKKPCISIKAHKADVNVISWNRLASSMIASGCDDGSFSVRDLRSIQEDSLVAHFE
YHKKAITSIEWSPHEASSLAVTSEDHQLTIWDLSLERDAEEEAEFRAKMKEQANAPEDLP
PQLLFVHQGQKDLKELHWHPQIPSMIISTAVDGFNVLMPSNIDTTIPGNTDATMASAE
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgcatcaagaaggccaagaaggttaaatccaaggaggccaagaaagttgaagct
tcctcgtcatctaatcctgcggttgcctctggtccggccaaggtctggcaaccgggtgta
gatacactggaagatggggaggaactccagtttgatcctgaggcttacaattacctccga
gggttcgacattggctggtcttgcttgagttttgatattgtgcgcgatcaacttggactc
gtacgatcggagttcccccatacattatatggtgttgctggaacgcaggctgagaaggct
tcatcgaattatattggcattttcaagctttctaacataagggggaagaagcgggaacct
ataccagcttcaacagttgatggtgacactgatgtggatagtgacagcagcagcgatgaa
gaagatgaagaaattattgaggatacaaagcccattctacatctaaaaaaggtggctcat
gcgcgttgtgtaaatcggatacgctcaatgactcaaaaaccacatatatgtgctacgtgg
ggagatactggtaatatccaggtgtgggacttgagctcctaccttaattccttagcagaa
gcagagtcaggggcacctgcacccaaagaagatgacataattcacaaacacttgcctctg
aaagtatttagtggccataaagatgagggatatgcaattgattggagtccgcttgttact
ggaagacttgtttctggcgactgcaataagtgcattcacctgtgggagccaactccaaac
aactggaacgtagatgccaatccatttgttggacacactgccagtgttgaagatctacag
tggagtcccacggaagctgatgtatttgcctcttgttctgtggatggtacgatagcgata
tgggatacacgtacagggaagaaaccttgtatttctataaaagctcataaagccgatgtg
aatgttatctcatggaataggcttgctagctccatgatagcttcagggtgtgatgatggc
agtttctcagttcgtgatctcagatcaattcaggaggactcattggtagcccattttgag
taccacaagaaagcaattacatctattgagtggagtccacatgaagcgtcatcactggct
gtaacgtctgaagatcatcaactcacaatttgggacctttcactggaaagagatgctgaa
gaggaggctgagttcagagcgaagatgaaggagcaggcgaatgcacctgaagatttaccc
ccacaacttctctttgttcatcagggccagaaagacttgaaggaattgcattggcaccca
cagataccctcgatgatcatatctacagcagttgacggttttaatgtgttgatgcccagc
aacattgatacaaccattcctggcaacactgatgcaaccatggcatctgctgagtga
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