Panicum virgatum (switchgrass): 120686553
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Entry
120686553 CDS
T07260
Name
(RefSeq) long chain acyl-CoA synthetase 6, peroxisomal-like
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00061
Fatty acid biosynthesis
pvir00071
Fatty acid degradation
pvir01100
Metabolic pathways
pvir01212
Fatty acid metabolism
pvir04146
Peroxisome
Module
pvir_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
120686553
00071 Fatty acid degradation
120686553
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120686553
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pvir01004
]
120686553
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120686553
Enzymes [BR:
pvir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
120686553
Lipid biosynthesis proteins [BR:
pvir01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
120686553
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of breast milk
120686553
Exosomal proteins of breast cancer cells
120686553
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
DUF3572
HisKA_3
Motif
Other DBs
NCBI-GeneID:
120686553
NCBI-ProteinID:
XP_039824698
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All DBs
Position
8N:complement(1754963..1785003)
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AA seq
721 aa
AA seq
DB search
MATILSPSAAAREAHRREELAAAMEDADAAQRRVRAVAAHLQPPPATPAAGRGLAANPTA
GEYAHAQGYSVVLPEKLQTGKWNVYRSTRSPLSLISRYPGNLDIGTLHDNFAYAVETFRD
CKYLGTRIRADGTIGDYKWMTYGEASTSRTAVGSGLIYHGAPEGARIGLYFINRPEWIIV
DHACASYSYISVPLYDTLGPDAVQFILNHATVEVIFCVPQTLSILLSFIAQMPCVRLIVV
VGGDNAKMPSTPVTSGVEIITYSRLLIQGKSSPQPFRPPKPEDVATICYTSGTTGTPKGA
VLSHGNFIANVAGSSLNIKFYCKCLYISYLPLAHIYERVNQVALLHYGGAIGFYQGDNLK
LMDDLAVLRPTVFASVSRLYNRIYAAITNAVKESGGLKEKLFHTAYNAKRQAILSGRNPS
PMWDKLVFNKIKARLGGRVRLMTSGASPLSADVMEFLRICFGGEVLEGYGMTETSCIISA
MDIGDKSIGHVGSPISSCEVKLVDVPEMNYTSDDQPYPRGEICVRGPTIFRGYYKDEVQT
REVIDEDGWLHTGDIGLWLPEGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFIAQC
FIYGDSFNSSLVAIVAVEPEVLKAWAASEGIQYEDLRQLCVDPRARAAVLADMDSIGKEA
QLRGFEFAKAVTLVAEPFTLENGLLTPTFKVQRPQAKTYFAKEISDMYAELRETEPARPK
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggccaccattttgagccccagcgccgccgccagagaggcgcacaggagagaagagcta
gcggccgcaatggaggacgccgacgccgcccagcgcagggtccgcgcggtcgccgcgcac
ctccagccgccgccggcgacgcccgccgccggacgcggcctcgccgccaaccccaccgcc
ggcgagtacgcccacgcgcagggctacagtgttgttctccctgagaagttgcagactgga
aagtggaatgtgtatcgatccacgcgttcgcctctaagtttgattagtagatatcctggc
aatctggacattggaacgctgcacgataattttgcgtatgcagttgagacttttagagat
tgtaaatacctgggaacaagaatcagagcagatgggacaattggagactacaaatggatg
acatatggagaagctagcacaagcaggactgcagtaggttctggccttatttatcatgga
gcacctgaaggtgcacgcattggtttgtattttataaacagacctgagtggattatagtt
gaccatgcttgtgcttcatactcatacatatctgttccactttatgatactcttggtcca
gatgctgttcagttcattctgaaccatgcaactgtggaagttatattctgtgtgcctcaa
acactaagcattctgttaagttttatcgctcaaatgccatgtgttcggcttatagtggta
gttggtggagacaatgcaaagatgccttcaactcctgtaactagtggagtggaaatcata
acttactccaggttactcatccagggaaagtctagtcctcaaccttttcgtcctccaaaa
cctgaagatgttgccactatctgttacactagtggcactactggcacgccaaagggagct
gttctttctcacgggaactttattgcaaatgtagcaggatcaagcctgaacattaagttt
tattgcaaatgtttatatatctcatatctacctttggctcacatctatgagagggttaac
caggttgcattgctgcactatggtggtgccattggattctaccaaggggataatttgaag
ctgatggatgatttggctgttttgagaccgacagtattcgcaagtgtttcccggttatat
aacagaatttatgccgcaattacaaatgctgtgaaggagtctggtggcctgaaagaaaaa
ttgtttcatactgcatacaatgccaagaggcaagcaatcctttcaggtcgaaatccatcc
ccaatgtgggataagttggtatttaacaaaataaaagctaggcttggtggacgcgtgaga
cttatgacttcaggtgcatctccactgtcagcagatgtcatggaattcctaagaatatgc
tttggtggtgaagttcttgaaggctatggaatgacagagacatcttgtatcatatctgca
atggatattggtgataaatcaattggtcatgttggatcccctatttcatcttgtgaggtg
aaacttgtggatgtcccagaaatgaattatacttctgatgatcaaccatatcctcgtgga
gaaatttgtgttagaggacccacgatattccgtggttactacaaagatgaagtacaaaca
agagaagtcattgatgaagatggttggttgcacactggagacataggtctgtggttgcct
gaagggcgtctaaagattattgataggaaaaagaacattttcaagttagctcaaggagaa
tacatagctccagagaagattgaaaatgtctatgccaaatgcaagttcattgcccaatgc
tttatatatggtgatagtttcaactcttccctagttgctattgttgcagttgaaccagag
gttttgaaggcttgggctgcatctgaaggaatccagtatgaagacttaaggcagctttgt
gttgatcctagagcaagagctgctgtcctggctgatatggattctattggaaaggaagca
cagctaagaggttttgaatttgctaaagctgttacgcttgttgctgaaccattcacattg
gagaatggtctcctcaccccaacatttaaggtccaaagaccgcaagctaagacatacttt
gcaaaagaaatatcagatatgtatgcagagttgagagagacggagccagctaggccgaag
ttgtaa
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