Panicum virgatum (switchgrass): 120686626
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Entry
120686626 CDS
T07260
Name
(RefSeq) protein indeterminate-domain 5, chloroplastic-like
KO
K25870
zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120686626
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120686626
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GFIT
Motif
Pfam:
C2CH-4th_BIRD-IDD
C2H2-2nd_BIRD-IDD
C2CH-3rd_BIRD-IDD
zf-C2H2
zf-C2H2_6
zf-met
zf-C2H2_jaz
zf-C2H2_4
zf-C2H2_STOP2_C
Motif
Other DBs
NCBI-GeneID:
120686626
NCBI-ProteinID:
XP_039824773
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Position
2K:complement(55233939..55239283)
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AA seq
512 aa
AA seq
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MAAASSAPFFGLGDTQMQPSLQQNSSAAAAAPGAAAAAAPPKKKRNQPGNPNPDAEVIAL
SPRTLLATNRFVCEVCNKGFQREQNLQLHRRGHNLPWKLKQKNPKEARRRVYLCPEPTCV
HHDPSRALGDLTGIKKHYCRKHGEKKWKCDKCNKRYAVQSDWKAHSKTCGTREYRCDCGT
LFSRRDSFITHRAFCDALARESAQMPPLGAGLYVGSGSMSLGLSGAAAQMHGFGDQAGQS
SSAAAAAQFDHIMPPSSGPSLFRSQVSAASSSSFFLGGGAPPPAPDFSDDPQGGQGSSLL
HSKSPFQGLMQLPEQQRQPGSSNANGNLLNLGFFSGNGGGSAGGQDARLVVQDQFNGGGG
GGGNADHGSVMASMGSHLSCGSFPSSLYNSSPSAGLAQNSATALLMKAAQMGSTSSAQNG
PSALLRAAGFSAASGQGTTSRACGEGTSHEAHFHDLIMNSLAGGGGGGFSGGAGFGAVDD
GKLSTRDFLGVGRGAMAPPGLHIGALDPAQMK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcctcgtccgcgcccttcttcgggctcggcgacacgcagatgcagccctct
ctgcagcaaaactcctccgcggcagcagccgctcccggcgccgccgccgccgccgcgccg
ccgaagaagaagaggaaccagcccggcaatccaaaccccgacgcggaggtgatcgcgctg
tcgccgcggacgctgctggcgacgaaccggttcgtgtgcgaggtgtgcaacaaggggttc
cagcgggagcagaacctgcagctccaccggcgcgggcacaacctcccctggaagctgaag
cagaagaaccccaaggaggcccggcggcgggtgtacctgtgcccggagccgacgtgcgtg
caccacgacccgtcccgggcgctgggcgacctcacgggcatcaagaagcactactgccgc
aagcacggcgagaagaagtggaagtgtgacaagtgcaacaagcgctacgccgtgcagtcc
gactggaaggcgcactccaagacctgcggcacgcgcgagtaccgctgcgactgcggcacg
ctcttctcaaggagggacagcttcatcacccaccgtgctttctgcgacgcgctggctcgt
gagagcgcgcagatgccgccattgggcgccggcctctacgtcggctccggcagcatgagc
ctcgggctctccggcgccgccgcccagatgcatggcttcggggaccaagccggccagtcc
tcttcagcagcggcggccgctcaattcgaccacatcatgccaccgtcctcgggcccctct
ttgttccgttctcaggtgtcggcggcctcgtcgtcgtctttcttcctcggcggcggcgct
cctcctcccgccccggacttctccgatgacccccagggcggtcagggctcgtctctgctc
cacagcaagtcgcccttccaaggcctgatgcaactccccgagcagcagcgccagccgggc
agcagcaacgccaacggcaacctcttgaacctcgggttcttctccggcaacggcggcggc
tcggccggcggccaggacgcgcgccttgtcgtccaagaccaattcaacggcggcggcggc
ggcggcggcaacgccgatcacggcagcgtgatggcgtccatgggcagccacctcagctgc
ggcagcttcccctcttcgctgtacaactcatctccatcggccggcctggcgcagaactcg
gcgacggcgctgctgatgaaggcggcccagatgggctcgacgtcgagcgcccagaacggc
cccagcgcgctgctccgcgccgccggcttcagcgccgccagcggccagggcactactagc
agggcctgcggagaagggacgtcgcacgaggcgcacttccatgacctcatcatgaactct
ctggcgggaggcggcggcggcggcttctccggcggtgcagggttcggcgccgtggacgac
ggcaagctgagcacgagggacttcctcggcgtcggcaggggcgccatggcgccgcccggg
ctccacatcggcgcactggacccggcccagatgaagtga
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