Panicum virgatum (switchgrass): 120686923
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Entry
120686923 CDS
T07260
Name
(RefSeq) transport inhibitor response 1-like protein Os11g0515500
KO
K27740
protein auxin signaling F-box 2/3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120686923
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Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
120686923
NCBI-ProteinID:
XP_039825053
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Position
8N:33573226..33578575
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AA seq
573 aa
AA seq
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MAYFPEEVVEKILGYVTSHRDRNATSLVSRAWYHIERRSRRSVLVSNCYAVRPERVLVRF
PSMRSLSVKGKPHFADFDLVPAGWGATADAWMDSCARACPGLEELRLKRMVVTDECLKLI
AGSFTNFKSLVLVSCEGFSTAGLATIATNCRFLKELDLQESVVKPRGHHWLNCFPKPSTE
LESLNFACLSGEVNASALERLVARSPNLKRLRLNRAVPFDVLYRILGRTPKLEDLGTGSF
VRGNNPAAYVSLFSALGKCSSLKSLSGFWDATGFFLRGIFSVCKNLTCLNLSYAPLIQSA
DLINIIRRCTKLHVLWLLDHIGDEGLKVVGFSCPDLRELRVFPGNANTTTVTEEGLVAIS
SGCRKLQSVLYFCNRMTNAALITIAKNCPQLASFRLCILELSSADAMTGQPLDEGFGAIV
QSCKGLRRLSMSGLLTDCVFLYIGMYAEKLEMLSVAFVGGSDDGMVYVLNGCKNLKKLEI
RDSPFGDTALLAGVDKYEAMRSLWMSSCNITLGGCKTLAASMPGVNVEVINDAGASIDEA
DEESSNAKKVEKLYLYRTIAGPRGDAPGFVSIL
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggcatacttcccagaggaagtggtggagaagatccttggctatgtaacctcgcacagg
gatcgcaacgccacgtcgctagtgtcccgggcatggtaccacattgagcgccgtagccgc
cgctcggtgcttgtaagcaactgctatgcagtgcgcccagagcgtgtgcttgtgcggttc
cccagcatgcgctcgctgagcgtgaagggcaaaccacactttgctgacttcgaccttgtc
ccggcggggtggggcgccacggctgatgcatggatggattcgtgtgcccgtgcgtgccct
ggccttgaggagctccggctgaagcggatggttgtgactgatgagtgcctcaagctgatt
gctggctcttttaccaactttaaatcacttgtccttgtcagctgcgaggggttcagcact
gctggccttgctactatcgccaccaattgcaggtttcttaaggaactggacttacaagag
agtgttgtgaaacctcgaggccatcattggcttaattgttttccaaagccttctacagaa
ctagaatccttgaactttgcttgtttgtctggggaggtgaatgcttctgcattggagagg
cttgttgcaaggagtccgaatcttaaaaggctaaggttgaatcgtgctgttccatttgat
gttttgtacagaatacttggtcgcacacctaagctggaggatttaggcacaggatctttt
gtaagaggcaataaccctgccgcatatgtcagtttgttctctgctctcggaaagtgcagt
tcactaaagagtttatcaggtttttgggatgctacgggcttttttcttcgaggaattttt
tcagtctgcaagaaccttacatgcttgaacctcagctatgctccattgattcaaagtgcc
gatcttatcaatataattcgtcggtgtacgaaactccatgtcttatggctgttagatcac
attggtgatgaaggattgaaggttgtgggcttttcttgtccagatctccgagagttgagg
gtatttcccggtaatgcaaacacaactactgtgacagaggaagggttggttgccatatct
tcaggctgtcgaaagttacaatctgttctctacttttgcaatcgaatgaccaatgctgca
ctgattactattgcaaagaactgcccacagttggcatccttcagactatgcattctcgag
ctcagttcagcagatgctatgacaggacagccactggatgaaggcttcggtgcaatcgtc
cagtcatgcaaaggccttaggcgtctctccatgtctggcctcctcacggactgcgtgttc
ctgtacatcggcatgtatgccgagaagctggagatgctctcagtggcatttgtggggggt
agtgacgatggtatggtctacgtgcttaatggctgcaagaacctcaagaagctggagatc
agggacagccccttcggcgacaccgccctccttgcaggagtggacaagtacgaggcgatg
cgctcgctctggatgtcctcctgcaacatcaccctagggggctgcaagaccctagcggcg
agcatgcctggtgtcaacgtggaggtcattaacgatgcgggagccagtatcgatgaagcg
gatgaggaatccagcaacgcgaagaaggtggagaagctgtatctctaccggacgatagct
ggaccccgtggcgatgcccctggattcgtctcaatattgtaa
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