Panicum virgatum (switchgrass): 120687283
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Entry
120687283 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 16-like isoform X1
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120687283
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120687283
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Helicases
120687283
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
120687283
NCBI-ProteinID:
XP_039825201
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Position
9N:complement(9322188..9337523)
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AA seq
627 aa
AA seq
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MPRVKPIPEMEEEAEEVRQEVEGASGAEGSPDAGAGGEEGAEEEEKEVSFDELGLDEQLK
RALRKKGIAKATPIQQEAIPLILEGKDVVAKAKTGSGKTFAYLLPLLHDLLKLSSEGRIR
KPAPNAFILVPTRELCQQVYNEASSLLEFCTSKLKVVQVTASMSDKDITVALSGPPNILV
STPACVATCISKGIMRGSSIKESLSMMILDEADLLLSYRCEDDLKALIPHIPRSCQSILM
SATSSSDVDKLIKLLLHNPFVLTLTEVGRAKDDVIPKNVQQFWISCDAKDKMLHILALLK
FELIQKKVLIFVNSIDAAFRLRLFLEKFGIRSAVLNAELPQNSRLHIIEAFNARLFDYLI
ATDDTKTKEDKQTDKENKKEARVSRKHLQQTLDAEFGVVRGIDFKNVFTVVNFDMPPDPA
GYVHRIGRTGRANKTGASVSLVSEEESSIFEDIEHMLQEVENKDIDCISPFPLLTKDAVD
SLRYRAQDVARSVTTRDIQEARRQDIKNEILNSEKLKSHFEENPRDLDLLKHDKLLSNKE
IPAHLRDVPDYLIDPKTKEASNVVKLSRAAMGIDKPQRRKRQGFKGGSGKSRDPLRTFSA
EGKSRRRRRKDREGEQDRRKKSKKAES
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcgtgaagcccatccctgagatggaagaggaggcggaggaggttaggcaggaa
gtcgaaggtgccagcggggcggaggggagcccggatgctggggccggcggcgaggagggg
gcggaggaggaagagaaggaggtgagcttcgatgagctgggcctggacgagcagctgaag
agggctctgaggaagaagggcatcgcgaaggcaaccccgatacagcaggaggccatccct
ctcatcctggaagggaaggatgtagttgcaaaggcgaagactggctctggaaagaccttt
gcctaccttctcccgttgctgcatgacctactgaagttatcctcagaaggccgtattcgt
aaacccgcaccaaatgccttcatcctggtgcctacacgagagttatgccagcaggtttat
aatgaggcatcatctctccttgagttctgtacatccaaattaaaggtcgtccaagtgact
gctagcatgtcggataaggatattactgttgcattgtctggcccccctaatattcttgtg
tcaactccagcttgtgttgcaacatgcatatcaaagggcattatgcgtggctcatcaatc
aaagaatctctttcaatgatgattctcgatgaggctgaccttcttctgtcctatcgctgt
gaagatgacttgaaagctctcatcccacatatcccaagaagctgtcagtccattctgatg
tctgcaacctcaagctctgatgtcgacaaattgatcaagctacttctgcacaacccattt
gttctaactcttactgaggttggtcgagctaaggatgatgtgatccccaaaaatgttcaa
cagttttggatctcatgcgatgccaaggataagatgcttcatatccttgcactcttaaag
tttgagcttattcagaagaaagttcttatatttgtcaactcgattgatgcggcattcaga
ttacgactgttcttggaaaagtttgggataagatccgcggtgttgaatgctgagttgcca
caaaattctcggctacatattatcgaggcattcaatgctagattatttgattatctgata
gcaacggatgacactaaaacaaaggaggataagcaaactgataaggaaaacaagaaagag
gcaagggtgtcccgcaaacatttgcagcagactttagatgctgaatttggagttgtcaga
ggaatcgacttcaaaaatgtattcacagtagttaattttgacatgccaccggatcctgct
gggtatgttcacagaataggacgaacagggagagcaaataagaccggtgcatctgtatcg
cttgtttcggaagaggagagtagtatttttgaagacattgagcatatgttgcaagaagtt
gaaaataaagatatagattgcatttcacctttccccctacttacaaaagatgctgtcgac
tctctacgatatagggctcaggatgttgcgaggagtgtgacaacacgtgatatacaggaa
gcacgtcgccaagacataaagaatgaaatcctgaattctgagaaattgaagtctcatttt
gaagagaatccaagagaccttgatttgctcaagcacgataagttgttaagcaacaaagaa
attcccgcacacctgcgtgatgttcctgactacctaattgatccaaaaacaaaagaagcc
agcaatgttgtcaaactttccagggctgctatgggtattgacaaaccccaaaggaggaaa
cgacagggattcaagggaggatctggcaaaagtagagacccccttaggactttctctgct
gagggcaaatcacggagacgacgcaggaaagatagagagggggagcaggatagaagaaag
aagagtaagaaggcagaaagctga
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