Panicum virgatum (switchgrass): 120687357
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Entry
120687357 CDS
T07260
Name
(RefSeq) myosin-6-like isoform X1
KO
K10357
myosin V
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
120687357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120687357
04131 Membrane trafficking [BR:
pvir04131
]
120687357
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120687357
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pvir04812
]
120687357
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
120687357
mRNA cycle factors
P-body specific factors
120687357
Membrane trafficking [BR:
pvir04131
]
Others
Actin-binding proteins
Myosins
120687357
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
120687357
Cytoskeleton proteins [BR:
pvir04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
120687357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
TSC22
DUF3138
AAA_22
AAA_16
Flp1_like
Motif
Other DBs
NCBI-GeneID:
120687357
NCBI-ProteinID:
XP_039825261
LinkDB
All DBs
Position
9N:270908..299906
Genome browser
AA seq
1490 aa
AA seq
DB search
MASKSRFVVGSHVWVEDPDEAWMDGLVEEINGDELVINCTSGKKVTANVSSTYPKDTESP
RGGVEDMTRLAYLHEPGVLQNLKSRYALNEIYTYTGNILIAVNPFQRLPHLYNNHMMGIY
KGVEFGELSPHPFAIADRSYRLMINDRISQAILVSGESGAGKTESTKSLMQYLAFMGGKA
QAEGRSVQQQILESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDANGKISGAAIRTYLLE
RSRVCQISDPERNYHCFYMLCSAPPEDCKKYKLGDARSFHYLNQSNCIALDGLDDSKEYM
ETRRAMGIVGISSDEQDAIFRVVAAILHLGNVEFAEGSEADSSVPKDEKSQFHLKTAAEL
FMCDEKGLEESLCKRVMATRGESITKNLDPRAAALSRDALARIVYSRLFDWLVNKINSSI
GQDPDSKILIGVLDIYGFESFLTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEID
WSYIQFVDNQEILDLIEKKPGGIIALLDETCMLRNSTHETFAEKLYQKFKDNPHFSKPKF
SRSDFTIHHYAGNVTYQTDLFLDKNIDYAVNEHQVLLNASKCSFVSCLFPPCEESTKSTK
FTSIGSSFKQQLQSLLETLSATEPHYIRCIKPNNVLKPGIFENSNVLQQLRCGGVLEAIR
ISCLGYPTRRTFYEFVNRFGILQPKVLGRSHNEVTAAKMLLDKANLTGYQIGKTKVFLRA
GQMAELDALRTEVLGHSAKKIQSKVRSFLARKKYTQLQLCATQLQAVCRGTIARRCYENL
RREAASLKIQTCYRMHHARKNYVDVCSASTTIQSGLRGMGARIKLHFKRQTKAAVIIQSH
CRCYLARSQYVRLMKATITAQCGWRRRVARRELRNLKMAAKETGALQAAKSKLEKEVEEL
TWRLQLEKRIRADMEEAKTQENKKLQLQLQELQLQLKDTKDLLKREHEAAKEASEKAAAV
PEILADTARVNDLTSENERLKMLVASFEEKLQKTEQKFEETEKAREELLNKATDAESKIN
ELKNTMQSLQEKLTNTEAENNVLRQQAMRARPDNMPLLNMHRKSNLGNGSVHSDEQTPHA
TPIEFGRRSLIERNNESVDTLINCVVENVGFSEGKPVAAITIYKCLLHWRVFETDKTNVF
DRLIQIFGSAMQKQDNNADLAYWLSNSSSLLIILQKSLKPPGSSVTTPMKRPQTQTSFLG
RMVFRASNITVDMDLVRQVEAKYPALLFKQQLTAFVEGLYGMIRDNVKKEISSVLSLVIQ
VTPSIESHPQAPRNAKAGLITDQGSYWQMIVNHLNDLLKILQENCVPAIFARKIFTQIFS
FINAHLLNSLLVRRECCSFSNGEYVKQGLDELESWCAQAKPEYAGSAWDELKHICQAVGF
LVIFKKFRISYDEIINDLCPVLSVQQIYKICTQYWDDKYNTESVSEEVLDEMKKLVNEGG
NSDNTFLLDEEISMPLSLEEIASSMDAKEFQNVSPPQELLDNAAFQFLRS
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaaaagccgctttgtcgtgggctctcatgtctgggttgaggacccagatgag
gcctggatggatggcttggtggaagagatcaacggggatgaacttgtcataaactgcacc
tctggaaagaaggtgactgctaatgtgtcgagtacctatcccaaggatacagagtctcca
cgcggtggtgtggaggatatgacaaggcttgcatatttacatgaaccaggagtgcttcag
aacctaaagtccagatatgcgctaaatgaaatatatacttataccgggaatatcttgata
gctgttaatccatttcaaagacttcctcacctatacaacaatcatatgatggggatttac
aaaggcgtggaatttggtgagctgagcccgcatccatttgctatcgctgaccgttcgtac
agacttatgatcaatgaccgtataagccaagcaatattggtgagtggagagagtggagct
ggcaagactgaaagcacaaaaagtcttatgcaatatcttgcttttatgggtggtaaagct
caagctgaaggaaggtctgtgcaacaacagatcctggagtccaacccggttcttgaggca
tttggcaatgcaaaaactgtcaggaacaataattcaagccgttttggaaaatttgttgag
attcagtttgatgcaaatggaaagatatcgggagctgctataaggacgtatcttctagaa
agatcacgtgtgtgtcaaatatctgatccagaaagaaactaccactgcttttacatgcta
tgttctgcaccaccagaagattgcaagaaatataaattgggagatgccagatcatttcac
tatctaaaccagtctaattgtattgcgcttgatggactggatgactccaaagaatacatg
gaaaccagacgagctatgggtattgtgggtatcagttctgatgaacaggatgcaatattt
agagttgtggctgctattcttcatttgggcaacgtggaatttgcagaaggaagtgaagca
gattcttcagtacccaaagacgagaaatctcaattccatcttaagacagcagctgagctc
ttcatgtgcgatgaaaaaggtctcgaggaatctttgtgtaaacgtgttatggcaacacgt
ggggagagtattacaaaaaatttagacccacgagccgcagctctgagtagagatgcattg
gctcggatagtttactcacgtttgtttgattggcttgtaaataaaatcaatagttcaatt
ggtcaagatcctgattcaaagattttgattggtgtcctggacatttatggtttcgagagt
ttcttgacaaacagctttgagcaattttgtatcaatctgactaatgagaagctccaacaa
cactttaatcagcatgtttttaagatggagcaggaagaatatacgaaagaagaaatcgac
tggagttacatccaatttgtggacaaccaagaaatcctagatctaattgagaagaaaccg
gggggcataattgcacttttggatgagacatgcatgttgcgaaattcaacccacgagaca
tttgctgagaagctatatcaaaagtttaaagacaaccctcacttcagtaaacccaaattt
tcacggtccgacttcactattcaccactatgctggcaatgtcacttatcaaacggacctt
tttttagataaaaacatcgattatgctgtaaatgaacatcaagtcttgttaaatgcctca
aaatgttcatttgtttcatgtctttttccaccctgtgaagaatcaacaaagtccacaaag
tttacttcaatcggctcaagtttcaagcaacaactacagtctctgctagaaactctgagt
gcaacagaaccccactatatccggtgcataaaaccaaacaatgttctcaagccaggaata
tttgagaacagcaatgttctccagcagcttcgttgtgggggagttttagaggcaataaga
ataagctgtctgggataccctactaggagaacattttatgaatttgtcaatcgatttggt
attctgcaacctaaagttctgggtcgaagccataatgaagttactgctgcaaagatgctt
cttgacaaagccaatcttacaggttatcagattggaaaaacgaaagtatttcttcgcgct
ggtcaaatggcagagttagatgctctaagaactgaagtcttgggacattctgctaaaaaa
atacaaagcaaagttcggtcatttctggctcgaaaaaaatatacccagcttcaactatgt
gctacacaactccaggcagtatgcaggggaacaattgcaagaaggtgttatgaaaacctt
cgtagggaagcggcctcattgaaaattcagacctgctaccgtatgcaccatgcaaggaaa
aactatgtagatgtctgttctgcatcaactactatccaatcgggtctacgtggtatgggt
gctcgcatcaaactccactttaagcggcaaacaaaagctgcagtcattattcagagtcac
tgccgctgttatttagcacgctcacaatatgttaggctgatgaaggccacaatcacggct
cagtgtggttggagaagaagagtggccagaagggaacttcgaaacctgaaaatggcagca
aaagaaactggtgctctacaggctgccaaaagcaaactagagaaggaagtcgaggagctt
acttggcgactacagctggagaaacgtattagggctgacatggaagaagccaagacacaa
gaaaataagaagctccaattacaattgcaggagttgcaattgcagctcaaggacacaaag
gacctattgaaaagggaacatgaagctgccaaagaagcatcagagaaagctgctgcagta
ccagagatccttgctgatacagctcgagtcaatgatcttacttcggaaaacgagcggctt
aagatgttggtggcctcttttgaggaaaaacttcagaaaacagagcagaagtttgaagaa
acagagaaagctagggaagaattactcaataaagccacagatgcagagtcaaagataaat
gaactgaagaacacaatgcaaagccttcaagaaaagctgactaatacggaagcagaaaac
aatgttctccgccagcaggctatgagagcaagacctgataatatgcctttgcttaacatg
catcggaaatcaaatttgggtaatggaagcgtacattctgatgaacagacacctcacgcc
actcctattgaatttggaaggagatccctcattgagagaaataatgagagtgttgacacg
ctgataaattgtgttgttgaaaatgttggattcagtgaaggaaagccagttgctgcaata
accatatacaaatgccttcttcattggagagtttttgagacagacaaaacaaatgttttt
gatcgactgattcagatttttggttctgcgatgcagaaacaagataacaacgctgatctc
gcttactggttgtcaaattcatcatctttattgattatactacaaaagagcctcaaacct
cccggttcttctgtaacaactccaatgaaaagaccacagactcagacatcgttccttgga
aggatggtattccgtgcttcaaatattactgttgatatggatctggtgcgccaagttgag
gccaagtatcctgctctccttttcaagcagcaactaacagcttttgtggaaggcttatat
ggaatgatccgagataatgtgaagaaagaaatatcttcagtactgtcactagtcattcag
gttaccccatctatcgaaagtcaccctcaggcaccaagaaatgcaaaagctggtttgatt
acagatcaaggtagctattggcagatgatagtcaaccatttgaatgacctcttgaaaatt
ttgcaagaaaattgtgtacccgcaatttttgctcggaagatctttacacagatattctca
tttattaacgctcatcttttaaatagtcttcttgtgcggcgtgagtgctgttcttttagc
aatggggaatatgtgaaacaaggactggatgaacttgagtcatggtgcgcacaggccaag
ccagagtatgcaggatctgcatgggatgaacttaagcacatatgccaagctgttggcttc
ttggtcattttcaaaaagttcaggatctcatatgatgaaatcatcaacgatctgtgccca
gtgttgagcgttcaacagatttacaaaatatgcacgcagtactgggatgacaagtataat
accgagagtgtatctgaagaggtgcttgacgagatgaaaaaactggtgaacgaggggggc
aattcagacaatacgtttttactcgatgaggaaataagcatgcctctatcgctggaggag
atcgcgagctcaatggacgccaaggagttccagaatgtgagtccgccgcaagaactcctt
gacaacgcggcattccagttcttgagaagctga
DBGET
integrated database retrieval system
