Panicum virgatum (switchgrass): 120687387
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Entry
120687387 CDS
T07260
Name
(RefSeq) heat stress transcription factor A-1-like
KO
K09419
heat shock transcription factor, other eukaryote
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120687387
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Heat shock factors
120687387
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GFIT
Motif
Pfam:
HSF_DNA-bind
APG6_N
TMF_TATA_bd
CENP-F_leu_zip
BRE1
Tropomyosin
XhlA
CC_Bre1
ARHGEF5_35
Motif
Other DBs
NCBI-GeneID:
120687387
NCBI-ProteinID:
XP_039825298
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Position
9N:complement(693655..697489)
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AA seq
522 aa
AA seq
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MQGGVAAAAAAAAAAAAATVTTAVAPPVAPAPAAATAHAAVGNGGAAAAPPPPFLMKTYE
MVDDPATDDVVSWGPGNNSFIVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPD
RWEFANEGFLRGQKHLLKTINRRKPSLQGNSQPQQPQLQNAPLPACVEVGKFGLEEEIER
LKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMESRQQQMMSFLAKAMQSPGFLAQF
VQQNENSRRRIVAVNKKRRLPKQDDGLDSESASASLDGQIVKYQPMINEAAKAMLRKILK
LDVSHRFESVGNSDNFLLENYLPAAQGFDSSSSTRNSGVTLAEVPANSGLPYVAASSGLS
AICSSSVAPEIQCPVVLDNSSSNQVPNMSVVPPVSKPIAPGSDITIPEFPDLADIVSDDS
DIPGGPFGMPGPEFPLAEEGDDSVPIETDEILYNDETQKLPAIVDSFWEQFLVGSPLSVD
NDEVDSGVLDTRETLPENGWKKVEHVANLTEQMGLLSPNHRG
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgcagggcggtgtcgcggctgctgctgctgctgctgctgcggcggccgcggcgacggtg
accacggcggtggcgcctccagtggccccggcccctgcggccgcgaccgctcacgcggcg
gtgggtaacggcggggcggccgccgcgccgccgccgcccttcctcatgaagacctacgag
atggtcgacgacccggccacggacgacgtcgtgtcctggggccccgggaacaacagcttc
atcgtctggaacacgcccgagttcgccagggacctcctgcccaagtacttcaagcacagc
aacttctcctccttcgtcaggcagctcaacacatatgggtttagaaaggttgatccagac
agatgggaatttgcaaatgagggttttctgagaggacaaaaacatctattgaagactatc
aacagaaggaaaccatcgttgcaggggaacagccagccgcagcagccccaattgcagaac
gctcctttgccagcctgtgttgaggtcggtaaatttgggctggaggaagagatagaacgg
ctgaaaagggataagaatgttcttatgcaagagcttgtcaggctgagacagcaacagcag
acaactgaccatcagctgcagactttggggaagcgtcttcaagggatggagtcacggcag
caacagatgatgtctttcctggccaaagcaatgcaaagtcctggtttcctagcacagttc
gtacagcaaaatgagaacagcaggaggagaatagtagccgtgaacaagaagaggaggctg
cccaagcaagatgacggcctagactctgaaagtgcttctgcctcattggacggtcaaatt
gtcaagtatcagcctatgatcaacgaagctgccaaagcaatgctgaggaagatcctaaag
ctagatgtttcacatagatttgaatctgtgggcaattcagataattttctactggagaat
tatctgccagccgctcaaggttttgacagctcttcgtcgaccagaaattctggggtaacc
cttgcagaggttccagctaactcaggtttgccgtatgtggctgcgagctctgggctttca
gctatctgttcgtcttcagtggctcctgaaatccagtgtccagttgttttggacaacagc
tcatccaaccaagttcccaacatgagtgttgtgcctcctgtttcaaagcctatagcacca
gggagtgatatcactattccggaattcccagatctggctgacatagtatctgatgactct
gatattcctggaggaccctttgggatgcctggacctgagtttcccctggccgaagagggt
gatgacagtgtccccatcgagactgatgagattttgtacaatgatgagactcagaagctg
ccagcaattgtcgattccttctgggagcagttcctggttggcagccctctatctgttgat
aacgatgaagttgattcaggtgtactagatacaagggagacactaccggagaatggatgg
aaaaaagtggagcacgtggctaaccttacggaacagatgggccttctatcaccaaatcac
agggggtga
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