Panicum virgatum (switchgrass): 120687570
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Entry
120687570 CDS
T07260
Name
(RefSeq) protein argonaute 18-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120687570
03036 Chromosome and associated proteins [BR:
pvir03036
]
120687570
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120687570
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120687570
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
120687570
microRNA pathway
RISC loading complex
120687570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
PAZ
ArgoN
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
120687570
NCBI-ProteinID:
XP_039825521
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Position
2K:55935838..55941848
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AA seq
922 aa
AA seq
DB search
MPPGNHHGHGGGRRGAQRRVKANPNGTEEGNRDGHHDDDRGRADLRQTRPSLVAADADKA
AAPLLEEFAALGIQARRAEPVFPPRPGYGAAGTPCVVRANRFLARFVDEGLHHYDVTISP
DPTPKGEFREVMSKLVSEYQHTELGGRFPAFDGRDSLFTAGALPFDIMKFKVTLSACVDK
GRMRARKYKVVIKHAAAISLLQLRMLLAGYPTDIPAQALQVLDNVLRDVVFNKRDDMEYI
AVGRSFFSQKLGCAKDGTLGVEAWKGLYESIRPMQNGLSVLVDVSSSVFIEPLLLIDFVQ
KTLKIGVLNRKLTKPEHAKLLKAVRGVRIEVTHRGSERRKYRITGLSVNPTKLLSFKTPS
GATKTVIDYFREKYNLTLKYNFLPCLNVGSEQKPVYLPIEVCKIVPRQHYQKKLDGSQVS
TLMKSTCQFQPKQQSICQVVESKQYDTTKHANEFGIDVDDNLATVNARVLPPPNLKYHDS
GSEKTWSPMNGYWNMKDKKVVNGANIRNWACINFCEDLSKNVAEQFCFKLAEISRITGVE
LADLKLPIFTARPDQVEDDIHTCYQEAQKELMDQKIDLLLAILPDNNGSLYGNVKKICET
DIGVMSQCCRKSIVFTKYSKILANIAIKINAKAGGRNSVFEDAQKSLPVVSNKPTIIFGA
HVTHPSAVDHSAPSISSVVASQDWHEVDKYNGVVRAQGQREEMISGLEDMVKELLHAFEK
ESNRKPQQLIFYRDGVSWSQLKQVFEKEIPEIEKAWKAMYNNEKPQITFIAVQKRHSLML
FPNNNNKRHNANRKNVEPGTVVDSEICHPAEFDFFLCSYAEIKGPSHPVHYIVLRDDNNF
RADELQALTNNLCYTHASSTKAMTIAPPAYYARKLAQRAHLYLAQDPDAAKAASSRGATA
PAGGLKQLPEIKDELKRSMFYC
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgggcaatcaccacggccacggcggagggcgccgcggcgcccagcggcgggtc
aaggcgaacccgaacggcactgaggaggggaaccgcgacggccaccacgacgacgaccgc
gggcgcgccgatctgcgccaaaccaggccctccctcgtggcggccgacgcggacaaggcc
gccgcgccgctgctggaggagttcgctgcgctcggcatccaggcccgccgcgccgagccc
gtgttcccgccgcggcccgggtacggcgccgcggggacgccatgcgtcgtcagggccaac
cgcttcctcgcccgcttcgtcgacgagggcctgcaccactacgacgtgaccatctcgccg
gatccgacgcccaagggcgagttcagggaggtcatgtcgaagctggtgtccgagtaccag
cacaccgagctcgggggccgcttccccgcgtttgacggccgcgactcgctcttcaccgcg
ggcgcgctgccgttcgacatcatgaagttcaaggtcaccctctctgcttgcgtcgacaaa
gggaggatgagggccaggaagtacaaggtggtgatcaaacatgctgcggcgatcagcctg
ctgcagctgaggatgctcttggcgggctaccccacggacatccccgcgcaggcactgcag
gtcctcgacaacgtgctgcgcgatgtcgtcttcaacaaacgcgatgacatggaatacatt
gcggttggtcgatcgttcttctcgcagaaactaggatgtgccaaggatggtaccctgggt
gttgaggcatggaaggggctctatgagagcatcaggccgatgcagaacggtttgtctgtg
cttgtagacgtgtcttcatcagtattcattgaacccctgctactaattgacttcgttcag
aagactttgaagataggtgtcctgaataggaaattgaccaaaccagagcacgccaagctc
ttgaaggctgtcaggggtgtgaggattgaagtcacacacagaggaagtgaacgccgtaag
tacagaattactggcttgtcagtgaaccctactaaacttttgagttttaaaacaccgagt
ggagctacaaagactgtcattgactacttcagagaaaaatacaatctgacactgaagtac
aattttctcccatgcctcaatgttggcagtgagcagaagccagtctatcttcctatagag
gtttgcaagatagttcccagacagcattaccagaagaagctggatggcagtcaggtttct
actctaatgaagtcaacctgtcagttccagcctaaacaacaatccatttgtcaggttgtt
gagagcaagcagtacgacaccaccaaacatgcaaatgaatttggcatagatgttgatgac
aatcttgctacagttaatgctagagttctgccgcctccaaatcttaagtaccacgattct
ggatctgagaaaacatggtctccaatgaatggatactggaacatgaaagacaagaaagta
gtaaatggtgccaacatcagaaactgggcatgcattaatttttgtgaagatttatccaag
aatgttgctgagcagttctgctttaagctagctgaaatatctcgtattactggagtggag
ttagccgatttgaagctcccaatattcactgcacgtccagatcaagttgaagatgatatt
catacatgctatcaggaagcgcagaaagagctgatggatcagaagattgacttactgctt
gctatactgccagataacaatggcagcttatatggaaatgtcaaaaagatctgtgagaca
gatattggtgtcatgtcacagtgttgccgaaagtcaattgtcttcacgaaatatagcaag
atattggcaaatattgccattaagatcaatgccaaggctggaggaaggaactcagtattc
gaagatgcacaaaagagtttgccggttgtttcaaacaagccgacgattatattcggtgct
catgttactcatccttctgctgttgatcattctgctccttccatttcttctgtcgttgca
tcccaagactggcatgaggtggacaagtataatggtgttgttcgtgcacaaggtcaacgt
gaagagatgatcagtggccttgaagacatggtcaaggagctcctgcatgcatttgaaaag
gagtccaacaggaagccccagcagctgatattctacagggatggcgtaagctggagccag
ttgaagcaggtttttgaaaaagaaatcccagagattgaaaaggcttggaaagcgatgtac
aataatgagaagccacaaatcaccttcatcgcagtgcagaagaggcatagcctaatgctg
tttcccaacaacaacaataagcgtcataatgctaataggaaaaatgttgagcctggcaca
gtggttgatagtgagatctgccacccagcagaatttgatttcttcctttgcagctatgct
gagatcaaagggccaagccatcctgtgcattacattgtgctgcgagatgacaacaacttc
agagcagatgaactgcaggctctcacgaataacctgtgctacactcatgcaagctccact
aaggcaatgacgatcgctcctcctgcttactacgctcgcaagctcgcacaacgtgcccac
ttgtaccttgctcaagatcccgacgcggcgaaggcggcgagctcccgcggtgcaactgct
cctgctggtggtctaaagcaacttccagagataaaggatgagctgaagaggtccatgttc
tactgctag
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