Panicum virgatum (switchgrass): 120687597
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Entry
120687597 CDS
T07260
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120687597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120687597
03009 Ribosome biogenesis [BR:
pvir03009
]
120687597
04131 Membrane trafficking [BR:
pvir04131
]
120687597
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120687597
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
120687597
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
120687597
Membrane trafficking [BR:
pvir04131
]
SNARE
SNARE associated proteins
Others
120687597
Autophagy
Aggrephagy
Other aggrephagy associated proteins
120687597
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120687597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
AAA_33
AAA_5
CDC48_2
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_28
Mg_chelatase
AAA_17
ATPase_2
Parvo_NS1
AAA_18
Viral_helicase1
IstB_IS21
ABC_tran
Vps4_C
AAA_lid_PRS2_C
AAA_7
NACHT
NB-ARC
TsaE
DUF815
AAA_24
ResIII
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
120687597
NCBI-ProteinID:
XP_039825545
LinkDB
All DBs
Position
9N:complement(26747776..26752376)
Genome browser
AA seq
810 aa
AA seq
DB search
MASQGEPSASASDPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLF
RGDTVLLKGKKRKDTICIVLADETCEEPKVRMNKVVRQNLRVRLGDVVSVHQCQDVKYGK
RVHILPIDDTVEGITGNLFDVFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAE
YCIVAPDTEIFCDGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSI
GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA
EKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSI
DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLELIAKDTHGYVGADLAA
LCTEAALQCIREKMDIIDLEDETIDAEILNSMAVTNDHFKTALGTSNPSALRETVVEVPN
VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN
ECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA
GGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEQSR
LQIFKACLRKSPVAKEVDLNALAKYTQGFSGADITEICQRAVKYAIRENIEKDIERERRR
KDNPEAMEEDEVDDIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFR
FSEQSTTAATTAAADPFASTGAADDDDLYS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggcgagccaaggggagccgtcggcctccgcttcggatccgaaggggaagaaagactac
tctacggcgattcttgagagaaagaagtcgccgaaccgcctggtcgttgatgaggccacc
aacgacgacaactccgtcgtcgctctccacccggataccatggagaggctgcagctcttc
cgcggtgataccgtgctccttaagggtaagaagaggaaagacactatatgcattgtcctt
gcggatgaaacctgtgaggaaccaaaggttcggatgaacaaggttgtccgccagaacctg
agggtgaggcttggtgatgtggtttccgtccatcagtgccaggatgtgaaatatgggaag
cgtgtacacattcttccaattgatgatacagttgaaggcattacagggaacctgtttgat
gtcttcttgaaaccatacttcctagaagcgtaccgtcctgtgaggaaaggagaccttttc
cttgtcaggggtggaatgagaagtgtggagttcaaagtaatagagactgatcctgctgag
tattgcatcgttgccccagatactgaaatattttgtgatggggagcctattaagagggag
gatgaggaacgccttgacgaagttggctatgatgatgtcggaggagtcagaaagcaaatg
gcccaaatcagggagcttgttgagcttcctctgcgccatcctcagcttttcaaatctatt
ggtgtgaagccaccaaagggcatattgctgtatggaccacctggttctgggaagactctt
attgcccgtgcggttgcaaatgagactggagcctttttctttcttatcaatggcccagag
attatgtcaaagctagcaggtgagagtgagagcaatctcaggaaggcatttgaagaagca
gaaaaaaatgctccatctattattttcattgatgaaattgattccattgctcccaagaga
gagaaaaccaatggagaagtggagcgtcgtattgtttcacagctgctgactcttatggac
ggactcaaagctcgttcccatgttattgttatgggtgctacaaacagaccgaacagcatt
gatcctgctcttcgaagatttggaaggtttgaccgggaaattgacatcggtgttcctgat
gaagttggaaggcttgaggtcctccgcatccacacgaagaacatgaaacttgctgaggat
gttaatttggaactcattgccaaggatacccatggatatgttggtgctgatcttgctgct
ctttgcactgaggctgctcttcagtgcattcgtgagaagatggacatcatagatcttgag
gatgagactatagatgctgagatactgaactcgatggctgttacaaatgaccatttcaag
actgcacttggaactagtaacccatctgctctccgtgaaactgttgttgaagttcctaat
gtctcttgggaggatatcggtgggctggaaaacgtcaagagggagctccaggagactgta
caatatcctgttgagcacccagagaagtttgagaagtttggcatgtctccatccaaagga
gttctgttctatggccctcctggttgtggtaagaccttgttggcaaaggcaattgccaat
gagtgccaggccaacttcatcagtgtcaagggtcctgaattgcttaccatgtggtttggt
gagagtgaagccaacgtccgtgaaattttcgacaaggctcgccaatctgctccctgtgtc
ctcttctttgatgaacttgactcgattgctactcagagaggtagcagtgttggtgatgct
ggaggtgcagctgatagagtactcaatcagctattgacagagatggacggcatgaatgct
aagaaaaccgttttcattattggggctacaaacaggcctgatatcattgatccagctttg
cttaggccagggcgtcttgaccagctgatctacattccactgcctgatgagcagtctagg
ctacagatcttcaaggcctgtctaaggaagtcccctgtggcgaaggaagtggacttgaat
gctcttgctaagtacacccaagggttcagtggtgcagacatcactgaaatttgccagcgt
gcagtcaaatatgccatcagagagaacattgagaaggacattgagagggaaaggcggaga
aaggacaaccccgaggcaatggaggaggatgaagtggatgacattgctgaaatcaaggca
gctcactttgaggagtctatgaagtatgcgcgccgcagtgtcagcgacgcagatatccgc
aagtaccaggcgtttgcccagacgttgcagcagtcccgtggattcggcagtgagttccgc
ttctcggagcagtcaacgacagcagccaccacagctgcagctgatccttttgcatccact
ggtgcagccgatgatgacgatctatacagctag
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