Panicum virgatum (switchgrass): 120687600
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Entry
120687600 CDS
T07260
Name
(RefSeq) heat shock 70 kDa protein 4-like
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
pvir04141
Protein processing in endoplasmic reticulum
pvir04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120687600
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120687600
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120687600
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120687600
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120687600
03009 Ribosome biogenesis [BR:
pvir03009
]
120687600
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120687600
04131 Membrane trafficking [BR:
pvir04131
]
120687600
03051 Proteasome [BR:
pvir03051
]
120687600
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120687600
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120687600
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
120687600
Spliceosome [BR:
pvir03041
]
Complex B
Other components
Prp19 complex
120687600
Complex C
Prp19-CDC5 complex
120687600
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
120687600
Chaperones and folding catalysts [BR:
pvir03110
]
Heat shock proteins
HSP70 / DNAK
120687600
Membrane trafficking [BR:
pvir04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
120687600
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
120687600
Proteasome [BR:
pvir03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
120687600
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
120687600
Exosome [BR:
pvir04147
]
Exosomal proteins
Proteins found in most exosomes
120687600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
FGGY_C
Hydantoinase_A
Radial_spoke_3
DACNG
Motif
Other DBs
NCBI-GeneID:
120687600
NCBI-ProteinID:
XP_039825550
LinkDB
All DBs
Position
9N:complement(69475800..69478148)
Genome browser
AA seq
649 aa
AA seq
DB search
MAGKGDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKN
QVAMNPINTVFDAKRLIGRRFSDASVQSDIKLWPFKVVPGSADKPMIGVMFRGEEKQFSA
EEISSMILNKMKETAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEP
TAAAIAYGLDKKSSSDGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRLVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFY
TTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPRVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQAAILTGEGNEKVQDLLLLDVSPLSLGLETAGGVMTVLI
PRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQI
TVCFDMDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKK
KVDAKNSLENYAYNMRNTIRDDKIASKLPEADKKKIDDAIEGAITWLDNNQLAEVDEFED
KMKELEGICNPIIAKMYQGAAGPDMAGGMAGDAPAAGGSGAGPKIEEVD
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggccgggaagggagacgggccggcgatcgggatcgacctcggcacgacctactcgtgc
gtcggggtctggcagcatgaccgcgtcgagatcatcgccaacgaccagggcaaccgcacc
acgccgtcgtacgtcgcgttcaccgacaccgagaggctcatcggcgacgccgccaagaac
caggtcgctatgaaccccatcaacaccgtcttcgatgccaagcggctcatcggccggcgc
ttctcggacgcgtcggtgcagagcgacatcaagctgtggcctttcaaggtggtcccgggc
tccgccgacaagcccatgatcggggtgatgttcaggggcgaggagaagcagttctcggcc
gaggagatctcctccatgatcctgaacaagatgaaggagacggccgaggcctacctcggc
agcaccgtcaagaacgccgtcgtcaccgtgccggcctacttcaacgactcccagcgccag
gccaccaaggacgccggcgtcatctccggcctcaacgtcatgcgcatcatcaacgagccc
accgccgccgccatcgcctacggcctcgacaagaagtcgagcagcgacggtgagaagaac
gtgctcatcttcgacctcggcggcggcaccttcgacgtctcgctcctcaccatcgaggag
ggcatcttcgaggtcaaggccacggccggcgacacccacctggggggcgaggacttcgac
aaccgcctcgtcaaccacttcgtgcaggagttcaagaggaagaacaagaaggacatcagc
ggcaaccccagggcgctccggcgtctgaggacggcctgcgagagggcgaagcggacgctc
tcctccaccgcccagaccaccatcgagatcgactccctctacgagggcatcgacttctac
acgaccatcacccgcgcccggttcgaggagctcaacatggacctcttccgcaagtgcatg
gagcccgtcgagaagtgcctccgcgacgccaagatggacaagagcagcgtgcacgacgtc
gtgctcgtgggcggctccacccgcatcccccgcgtgcagcagctgctccaggacttcttc
aacggcaaggagctctgcaagagcatcaaccccgacgaggccgtcgcgtacggcgccgcc
gtccaggccgccatcctcaccggcgagggcaacgagaaggtgcaggacctgctcctgctc
gacgtctcgccgctctcgctcggcctggagacggccggaggcgtcatgactgtgctgatc
ccgaggaacaccaccatcccgaccaagaaggagcaggtcttctccacctactccgacaac
cagcccggcgtgctcatccaggtgtacgagggtgagagggcccggaccaaggacaacaac
ctgcttggcaagttcgagctctccggcatccctccggcgccaaggggcgtcccccagatc
accgtgtgcttcgacatggatgccaacggcatcctgaacgtgtcggcggaggacaagacc
accggccagaagaacaagatcaccatcaccaacgacaagggccggctgagcaaggaggag
atcgagaagatggtgcaggaggccgagaagtacaaggccgaggacgaggagcacaagaag
aaggtggacgccaagaactcgctcgagaactacgcctacaatatgcgcaacaccatcagg
gacgacaagatcgcgtccaagctcccggaggccgacaagaagaagatcgacgatgccatc
gagggtgccatcacctggctggacaacaaccagctcgccgaggttgacgagtttgaggac
aagatgaaggagctggagggcatctgcaaccccatcatcgccaagatgtaccagggcgcc
gctggtcctgacatggccggtggcatggctggggatgctccggcggccggcggcagcggt
gctggacccaagatcgaggaagtcgactaa
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