KEGG   Panicum virgatum (switchgrass): 120687795
Entry
120687795         CDS       T07260                                 
Name
(RefSeq) coatomer subunit beta'-2-like
  KO
K17302  coatomer subunit beta'
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120687795
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pvir04147]
    120687795
Membrane trafficking [BR:pvir04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    120687795
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   120687795
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_IFT140_1st WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_HPS5 NBCH_WD40 PEP5_VPS11_N WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N TPR_12 TPR_8 HEAT_GCN1 WD_LRWD1 Clathrin
Other DBs
NCBI-GeneID: 120687795
NCBI-ProteinID: XP_039825817
LinkDB
Position
1K:complement(9453115..9463082)
AA seq 920 aa
MPLRLDIKRKLAQRSERVKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTDLPV
RSAKFISRKQWVVAGADDMVIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDD
MLIKLWDWDKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWSLGSPDPNFT
LDGHSKGVNCVDYFTGGDRPYLITGSDDQTAKVWDYQTKSCVQTLEGHAHNVSAVCFHPE
LPIIITGSEDGTVRMWHSTTYRLENTLNYGLERVWALGYMKGSRRVVIGYDEGTIMIKIG
REVPVASMDSSGKIIWAKHNEIQTVNIKSVGVDNEIADGDRLPLAVKELGSCDLYPQTLR
HNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSTDGEYAVRESTSRIKIYSKNFQ
EKKSIRPSFSAERIFGGVLLAMCTNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVTI
ASDTSFYILKYNRDVVSSHLDGGGSVGEEGVEDAFELLHEINERVRTGLWVGDCFIYNNS
SWRLNYCVGGEVTTLFHLDRPMYLLGYLANQSRVYLIDKQFNVVGYTLLLSLIEYKTLVM
RGDFDRANDILSSIPKEQYDSVARFLESRGMLEEALEIATDTNYRFDLAVQLGRLEIAKA
IATEVQSESKWKQLGELAMSTGKLDMAEECLLHAMDLSGLLLLYSSLGDADGITKLASVA
KEQGKNNVSFLCFFMLGKLEECLQLLIESNRIPEAALMARSYLPSKAPEIVALWKKDLQK
VNPKAAESLADPNEYSNLFDDWQIALNVEATVAPKRGIYPPAEEYMNHAERSSESLVEAF
KNMHVHEEALPDDDEDAVNEVVEDGGVEESQEDAVEVDAEDGVEESQDDAVEVEAEGSTD
GAVLVNGNSSEEQWVLTPEQ
NT seq 2763 nt   +upstreamnt  +downstreamnt
atgccgctccggttggatatcaagaggaagctcgcgcagaggtcggagagagtcaagtcc
gtggatctgcatccgacagagccatggattttgtcaagtctgtactcggggagtgtttgc
atctggaactaccagacgcagacaatggtgaaatcatttgaagtcacggatttaccagtt
cgttcggccaaatttatttcacgaaagcaatgggtagttgctggtgccgatgatatggtc
atccgtgtgtacaattacaatacaatggataaggtcaaggttttcgaagctcatactgac
tacattaggtgtgtggctgttcatcctacccagccttttgtcctgtcgtcttctgatgac
atgctgattaagctatgggattgggataaaggctgggtgtgcactcaaatctttgagggg
cattctcactatgtgatgcaagtcacatttaacccaaaagataccaacacttttgctagt
gcctcccttgatcgcacaataaagatatggagccttggttctcctgaccctaactttaca
ctagatggccattcaaaaggtgtgaactgtgttgattacttcactggtggcgatcgacct
tacttaattactggctctgatgatcagaccgcaaaggtttgggattaccaaacaaagagc
tgtgttcaaacacttgaaggacatgcacataatgtctctgctgtatgtttccatccggag
ctacctataataattactggctcagaggatgggacagttcgaatgtggcactcgactacc
tacaggcttgagaacactcttaactatggccttgaacgagtttgggctttaggatacatg
aaggggtcaagaagggttgtgattggatatgatgaagggacaataatgataaaaattggc
cgtgaagttcctgttgctagcatggacagcagtggaaaaatcatatgggcaaagcataat
gaaattcaaactgttaacatcaagagtgttggtgtagacaatgagatcgcagatggcgat
agattaccattggccgtgaaggagttgggaagctgcgacctgtacccacaaacattaagg
cacaatccgaatgggagatttgttgttgtatgtggagatggagaatacataatatacaca
gcattagcatggagaaacagatcttttgggtctgcacttgaatttgtttggtcaactgat
ggagaatatgcagtcagagaaagcacctctaggataaagatatacagtaaaaatttccag
gagaagaaaagtataaggccatcattttccgcagaacgtatatttggcggagtgttacta
gctatgtgtacaaatgactttatttgcttctatgattgggcggaatgcaggttaatacgt
cgaattgatgtcaatgtgaagaatctttactgggccgacagtggtgacttagtaacaatt
gcaagtgacacatcattctacatattgaagtataatagggatgtagtttcatctcatttg
gatggagggggttcagttggtgaggaaggtgtggaagatgcctttgagctgcttcatgag
atcaacgaacgtgttcggactgggctatgggttggcgattgtttcatctacaataattct
tcatggcggcttaattactgtgtaggaggagaggtcacaaccttgtttcacttggatcgg
ccaatgtatttattaggatatcttgcaaaccaaagccgtgtctatcttatcgataagcaa
tttaatgttgtggggtatactttactccttagtttgatcgagtataaaacacttgtaatg
cgtggggattttgatcgtgcaaatgatattttatcatctataccaaaggagcaatatgac
agtgtggcacgtttcttggaatcacggggaatgttggaggaggcccttgagatagcaaca
gacactaattacagatttgacctggctgttcagcttggtcgacttgaaattgcaaaggcg
attgctactgaggtgcagagtgagtccaaatggaagcagctaggggagttagctatgtca
actggaaagcttgatatggcagaggagtgtcttctacatgctatggaccttagtggtttg
ttacttttatattcatcccttggggatgctgacggtattacaaaattggcatctgtagct
aaagaacaaggaaagaacaatgtttctttcctttgtttcttcatgctaggaaagttggaa
gagtgccttcaactgttaatagaaagcaatcgtattccggaagcagcattgatggcaaga
tcttatcttccaagcaaagcccctgagatcgtagcattgtggaaaaaggacctccaaaag
gtaaacccaaaagcagcagaatcgctggctgaccctaacgagtactcgaacttatttgat
gactggcagattgctctcaatgtagaagctactgttgcccccaaaaggggtatctatcca
ccggcagaggagtatatgaatcatgccgaaaggtcaagtgagagtttagtagaagctttc
aaaaatatgcatgtacatgaagaggcactaccagatgatgatgaagatgctgttaatgag
gtagtcgaggatggtggagtagaagagagtcaagaagatgctgttgaggttgatgctgag
gatggagtggaagagagtcaagatgatgctgttgaggttgaggctgagggttcaactgat
ggtgctgtccttgtgaatggaaatagtagtgaggaacagtgggtgctgacacctgagcaa
tag

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