Panicum virgatum (switchgrass): 120687868
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Entry
120687868 CDS
T07260
Name
(RefSeq) CSC1-like protein RXW8
KO
K21989
calcium permeable stress-gated cation channel
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120687868
Transporters [BR:
pvir02000
]
Other transporters
Pores ion channels [TC:
1
]
120687868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSN1_7TM
RSN1_TM
PHM7_cyt
Motif
Other DBs
NCBI-GeneID:
120687868
NCBI-ProteinID:
XP_039825881
LinkDB
All DBs
Position
9N:9675333..9680528
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AA seq
749 aa
AA seq
DB search
MEFSALLTSAGINIAVCVLFLSLYSVLRKQPHNFSVYFGRRLAEEKFQKQDDYFSFERLL
PTAGWIVKAYWCTEEEIRQVAGLDSVVFLRLFIFSIRIFSITSLVCVFGVLPVNYHGKEM
THNHIPTEPLNVFTIANIIEESQKLWVHCIALYIITISACILLFHEYKYISRKRLAHITG
SSPNPGHFTVLVRSIPKSDNELLDDTIRNFFVNYHGSSYLSHQMILRKGHFQRFVDRAER
AYRKFVRVRLSVSERNGRSSMSRCGVCGVRASSFQLYRNKFIEAKKADLTNPEVVDAQKN
CPGALVFFKTRYAAVVASRVLQSSNPMLWVTDLAPEPRDVYWSNLWIPYKQIWLRKLATL
AASVVFMFVFIIPVAFVQSMMQLEQLKKMFPNLRGLLNKSFFARVVTGYLPSVVLLLSLY
TVPPLMMLFSSIEGSISRSGRKRSACLKILFFTVWNVFFVNVLSGSVLNQLNVFTRPKDM
PTMLAELVPKQATFFITYVLTSGWASLCSEILQVYNLVYNFFSKCIFCCQQSTEYVYSFP
YHTEVPKVLLFILLGFTFAIMAPLILPFLLVYFCLGYLVYRNQILNVYYPKYEMGGKLWP
IMHNTIVFSLVLMQVIALGVFTIKHSPVASGFTILLLVATVLFNEYCRHRFSRIFEAYSA
QDVIELDRDDEQSGRMQEIHQHLQDAYSQTPPGAEGSSRSGGQVPIELILEDPAQEASES
SQELCDTVQEVSEAHEHSIEEAAGKAHCV
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggaattttctgcccttttgacttcggcggggataaatatcgctgtctgcgtgttgttc
ttgtccctctattctgtcctgaggaagcaacctcacaacttcagcgtatactttgggagg
cgtcttgctgaagaaaagttccagaagcaggacgattacttctcattcgaaaggttactg
cctactgctggttggattgtaaaggcatactggtgtaccgaagaagaaattcgccaagtt
gctggtttggactctgttgtgttcctccgcctcttcattttcagcattcggatcttctca
attacttctcttgtttgtgtatttggagtgcttcctgttaattatcatgggaaagagatg
actcacaatcatattccgacagagccgctgaatgtttttaccatagctaatatcatagaa
gaatctcaaaagctttgggtgcattgcattgctttatacataatcacaatctcggcttgt
attcttcttttccatgagtacaagtatatttcgaggaagagattagcacatattactgga
tcatcaccgaatcctggccatttcactgtgcttgtccgttcaattccaaagtcagacaat
gaactgcttgacgatacaatcagaaatttctttgttaactatcatggatcaagttacttg
tcacaccaaatgatccttcggaaaggacattttcagagatttgtggatagagcagagagg
gcttataggaaatttgtgagggtaagactttctgtatctgagaggaatggaagatccagc
atgtccagatgtggtgtttgtggagtaagagcttcttcatttcaactttaccgcaataag
ttcattgaggccaagaaggcagacctcacgaatccggaagtagtggatgctcaaaagaac
tgtccaggtgccttagtattcttcaagactcgctatgcagctgtcgtcgcttctcgagta
cttcaatcatcaaatcctatgttatgggtaacagatttggctcctgagccacgcgatgta
tactggtcaaatctttggatcccctacaaacagatctggctccggaaattagcgacactt
gcagctagtgttgttttcatgttcgtgttcattatccctgtcgcatttgtccaaagcatg
atgcaactcgagcagctcaaaaagatgtttccaaacttgagaggtctcctaaataagtcc
ttcttcgccagagttgtaacgggataccttcctagcgttgttctgttgctctccttgtac
accgtccctccactgatgatgctcttctcttcgatcgaagggtcgatctctcgcagcgga
agaaaaaggagtgcttgcttaaagattttgttctttaccgtctggaatgtcttctttgtt
aatgtcctgtcaggatccgtacttaatcagctcaacgtcttcaccagaccaaaggatatg
ccaactatgctagctgaactggtgccaaagcaggcaacctttttcatcacgtatgtcctc
acctcaggctgggcaagcctgtgctcggagattttgcaagtgtacaacctggtgtataac
ttcttcagcaaatgcatattctgctgccagcagagcacggaatatgtctactctttcccg
taccacactgaagtgcccaaagtcctcctgttcatcctgcttggcttcacgtttgcgatc
atggcgcccctcatcctgcccttcttgctcgtctacttctgcctaggctacttggtgtat
cggaatcagattctgaacgtgtactacccgaagtacgagatgggagggaagctgtggccc
atcatgcacaacaccatcgtgttctcgctggtcctgatgcaggtgatcgcgctgggcgtc
ttcaccatcaagcactccccggtggcgtcgggcttcaccatcctgctcctcgtcgccacg
gtcctcttcaacgagtactgccgccaccgcttctcccgcatcttcgaggcctactccgcc
caggacgtgatcgagctggacagggacgacgagcagtcggggcggatgcaggagatccac
cagcacctgcaggacgcgtacagccagacgccgccgggggcggagggctcctcccggagc
ggcgggcaggtaccgatcgagctcatcctggaggaccccgcgcaggaggcgtccgagtcc
agccaggagctctgcgacaccgtgcaggaggtgtccgaggcacacgagcacagcatcgag
gaggcggcaggcaaggcgcactgcgtgtag
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