Panicum virgatum (switchgrass): 120687883
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Entry
120687883 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120687883
03015 mRNA surveillance pathway
120687883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120687883
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120687883
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120687883
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
120687883
NCBI-ProteinID:
XP_039825895
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All DBs
Position
9N:complement(78541218..78551368)
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AA seq
496 aa
AA seq
DB search
MADKAFPEKKSWADVEEEEEAKAKAAAEAAAASSSSTSESAVEAQAKQIESLSLTPPEDD
AAGEEAPPLLDDSDDAQIQAVTSGGTVYESATTFEDLKLSPELLKGLHDEMGFSRPSKIQ
AITLPMILTPPYKDLVAQAHNGSGKTTCFVLGMLSRVDSNRRIPQAICICPTRELAQQNK
AVLMRMGKFTGITCACAIPPAQKDYVPVSKMPPINDQIVIGTSGTLIKWITNKKVATREI
KILVFDEADHMLAEDGFRSDSERIMRDIQRSAGGCQVLLFSATFNERVKDFVTKVIKDGN
QIFVKKEELTLEKVKQYKVQVPDEAAKIEVIRDKIFEFGQKVGQVIIFVRTKQSTKNVHN
ALTREDYVCSSIQGSLDQAEREKIIQEFKDGFTKVLISTDVLARGFDQAQVNLVINYDMP
IKFGTRDEPDYEVYLHRIGRAGRFGRKGAVFNLLCGETDNVVMKKIENYFQHQVPEVRNW
KNEEDFETALKDAGLL
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaaggcgtttccggagaagaagtcgtgggccgacgtcgaggaggaggaggag
gccaaggccaaggcggctgcggaggcggcggcggcctcgtcctcctccacctccgagtcg
gcggtggaggcgcaggccaagcagatcgagtcgctctccctcaccccgccggaggacgac
gccgccggcgaggaggccccgcctctcctcgatgactccgacgacgcgcaaatccaagcc
gtgacttcgggcggcacggtgtacgagtcggccaccacgttcgaggatctgaagctgtcg
cccgagctgctcaaggggttgcacgacgagatgggcttcagccgcccgagcaagatccag
gcgatcaccctccccatgatcctcacgcctccctacaaggacctcgtcgcgcaggcgcac
aacggctccggcaagaccacctgctttgtcctcggcatgctcagccgagtcgattccaat
cgcaggatcccccaggccatctgcatttgcccgactagggagctcgcgcagcagaataaa
gcagttctgatgaggatgggcaagtttactggcattacatgtgcctgtgcgatcccacca
gctcaaaaggattatgtgccggtctctaaaatgccgccaattaatgaccagattgtgatc
ggcacatctgggacactcatcaagtggattaccaataagaaggtggccacaagggagatc
aagatacttgtgtttgatgaggcggatcatatgcttgctgaggatggctttaggagtgat
tctgaaagaataatgagggatatacaaagaagcgctggtggttgtcaggtgcttctcttt
tctgcaactttcaatgagagggtgaaagattttgtaacaaaggttattaaggatggaaat
caaatattcgtgaagaaggaagagcttactttggaaaaagtaaagcaatacaaagttcaa
gtccctgatgaggcggcaaaaatagaggtcataagggacaagatctttgagtttggacaa
aaagttggccaggttatcatctttgttagaacaaagcaaagcactaagaatgttcacaat
gctttgacgagagaggactacgtgtgctcctcaattcaaggatcccttgaccaagcagag
agggaaaagattatacaggaattcaaggatgggttcaccaaggttcttatatcaaccgat
gtgcttgctcgtggttttgaccaagcacaggttaacctggtcatcaactatgacatgcca
atcaaatttggtacaagagatgaacctgattatgaggtgtacttgcacagaattggcaga
gctgggcgctttggccgaaaaggtgctgtgttcaacttgctgtgtggtgaaacagataat
gttgtgatgaaaaagattgagaactacttccagcaccaagtacctgaggtgcggaattgg
aaaaacgaggaagattttgagactgctctcaaggatgcaggtttactatga
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